Homologs in group_970

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05355 FBDBKF_05355 31.7 Morganella morganii S1 ugd UDP-glucose 6-dehydrogenase
EHELCC_12235 EHELCC_12235 31.7 Morganella morganii S2 ugd UDP-glucose 6-dehydrogenase
NLDBIP_12575 NLDBIP_12575 31.7 Morganella morganii S4 ugd UDP-glucose 6-dehydrogenase
LHKJJB_12435 LHKJJB_12435 31.7 Morganella morganii S3 ugd UDP-glucose 6-dehydrogenase
HKOGLL_11050 HKOGLL_11050 31.7 Morganella morganii S5 ugd UDP-glucose 6-dehydrogenase
F4V73_RS05810 F4V73_RS05810 32.0 Morganella psychrotolerans - UDP-glucose/GDP-mannose dehydrogenase family protein

Distribution of the homologs in the orthogroup group_970

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_970

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O33952 0.0 634 77 0 388 3 ugd UDP-glucose 6-dehydrogenase Escherichia coli
Q04873 0.0 630 77 0 388 3 udg UDP-glucose 6-dehydrogenase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q04872 0.0 630 77 0 388 3 ugd UDP-glucose 6-dehydrogenase Escherichia coli O111:H-
P76373 0.0 627 75 0 388 1 ugd UDP-glucose 6-dehydrogenase Escherichia coli (strain K12)
Q7DBF9 0.0 627 75 0 388 3 ugd UDP-glucose 6-dehydrogenase Escherichia coli O157:H7
Q8FG45 0.0 625 75 0 388 3 ugd UDP-glucose 6-dehydrogenase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P37791 0.0 578 71 1 388 5 udg Putative UDP-glucose 6-dehydrogenase Shigella flexneri
Q47329 0.0 570 69 0 388 3 kfiD UDP-glucose 6-dehydrogenase Escherichia coli
Q57346 1.31e-169 482 57 1 394 3 cap3A UDP-glucose 6-dehydrogenase Streptococcus pneumoniae
P0C0F4 1.74e-150 434 56 4 402 1 hasB UDP-glucose 6-dehydrogenase Streptococcus pyogenes
Q8NKX0 1.74e-150 434 56 4 402 3 hasB UDP-glucose 6-dehydrogenase Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5X9A8 1.74e-150 434 56 4 402 3 hasB UDP-glucose 6-dehydrogenase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DG69 2.03e-150 434 55 4 402 3 hasB UDP-glucose 6-dehydrogenase Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DG68 3.51e-150 433 55 4 402 3 hasB UDP-glucose 6-dehydrogenase Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
P0C0F5 2.37e-149 431 55 4 402 3 hasB UDP-glucose 6-dehydrogenase Streptococcus pyogenes serotype M1
Q0P8H3 5.12e-143 414 51 2 392 1 kfiD UDP-glucose 6-dehydrogenase Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q1RKF8 8.17e-48 171 30 11 407 3 udg UDP-glucose 6-dehydrogenase Rickettsia bellii (strain RML369-C)
Q92GB1 1.95e-44 162 32 9 355 3 udg UDP-glucose 6-dehydrogenase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O05973 3.51e-44 161 31 12 367 3 udg UDP-glucose 6-dehydrogenase Rickettsia prowazekii (strain Madrid E)
Q4UK39 6.53e-44 161 31 10 360 3 udg UDP-glucose 6-dehydrogenase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68VX0 5.65e-43 158 30 11 363 3 udg UDP-glucose 6-dehydrogenase Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P96718 5.98e-41 153 29 9 357 1 ywqF UDP-glucose 6-dehydrogenase YwqF Bacillus subtilis (strain 168)
O54068 5.44e-40 150 29 10 376 1 rkpK UDP-glucose 6-dehydrogenase Rhizobium meliloti (strain 1021)
O32271 6.83e-40 150 29 10 382 1 tuaD UDP-glucose 6-dehydrogenase TuaD Bacillus subtilis (strain 168)
P11759 1.03e-38 147 26 11 401 1 algD GDP-mannose 6-dehydrogenase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O34862 4.24e-37 142 29 11 360 3 ytcA Putative UDP-glucose 6-dehydrogenase YtcA Bacillus subtilis (strain 168)
Q887P8 2.05e-35 137 26 12 427 2 algD GDP-mannose 6-dehydrogenase Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q58454 1.16e-34 139 33 7 267 3 MJ1054 Uncharacterized protein MJ1054 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P59793 1.22e-33 133 26 12 427 3 algD GDP-mannose 6-dehydrogenase Pseudomonas syringae pv. syringae
O07299 1.59e-33 132 26 12 427 3 algD GDP-mannose 6-dehydrogenase Pseudomonas savastanoi pv. phaseolicola
Q88NC4 2.1e-33 132 26 12 405 3 algD GDP-mannose 6-dehydrogenase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
O86422 2.99e-33 132 25 6 359 3 udg UDP-glucose 6-dehydrogenase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P51585 6.9e-32 128 26 14 405 3 algD GDP-mannose 6-dehydrogenase Azotobacter vinelandii
D4GYH5 3.52e-31 126 28 11 368 1 aglM UDP-glucose 6-dehydrogenase AglM Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
O59284 1.47e-28 118 28 12 391 1 PH1618 UDP-N-acetyl-D-mannosamine dehydrogenase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q19905 2.15e-28 119 26 15 398 1 sqv-4 UDP-glucose 6-dehydrogenase Caenorhabditis elegans
Q9FZE1 4.95e-25 109 27 13 381 1 UGD1 UDP-glucose 6-dehydrogenase 1 Arabidopsis thaliana
Q2QS13 1.54e-24 108 26 12 374 2 UGD5 UDP-glucose 6-dehydrogenase 5 Oryza sativa subsp. japonica
Q5F3T9 2.68e-24 107 26 12 372 2 UGDH UDP-glucose 6-dehydrogenase Gallus gallus
Q9AUV6 3.48e-24 107 25 12 374 2 UGD3 UDP-glucose 6-dehydrogenase 3 Oryza sativa subsp. japonica
Q5R7B3 5.43e-24 106 25 11 371 2 UGDH UDP-glucose 6-dehydrogenase Pongo abelii
O70475 7.9e-24 106 25 12 372 1 Ugdh UDP-glucose 6-dehydrogenase Mus musculus
O60701 8.26e-24 106 25 11 371 1 UGDH UDP-glucose 6-dehydrogenase Homo sapiens
P12378 1.28e-23 105 24 10 370 1 UGDH UDP-glucose 6-dehydrogenase Bos taurus
O02373 1.35e-23 105 25 11 377 1 sgl UDP-glucose 6-dehydrogenase Drosophila melanogaster
O70199 1.51e-23 105 25 11 371 1 Ugdh UDP-glucose 6-dehydrogenase Rattus norvegicus
Q2QS14 3.18e-23 104 25 12 374 2 UGD4 UDP-glucose 6-dehydrogenase 4 Oryza sativa subsp. japonica
Q96558 8.8e-22 100 25 12 374 2 UGD1 UDP-glucose 6-dehydrogenase 1 Glycine max
Q75GS4 2.27e-21 99 24 10 371 3 UGD1 UDP-glucose 6-dehydrogenase 1 Oryza sativa subsp. japonica
Q9LF33 2.51e-21 99 26 12 376 1 UGD3 UDP-glucose 6-dehydrogenase 3 Arabidopsis thaliana
Q9FM01 8.19e-21 97 24 12 374 1 UGD4 UDP-glucose 6-dehydrogenase 4 Arabidopsis thaliana
B7F958 5.19e-20 94 25 11 388 2 UGD2 UDP-glucose 6-dehydrogenase 2 Oryza sativa subsp. japonica
Q9LIA8 6.61e-20 94 25 12 374 1 UGD2 UDP-glucose 6-dehydrogenase 2 Arabidopsis thaliana
Q57871 1.02e-17 87 27 15 379 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A4FY94 1.37e-17 87 26 15 384 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
Q9L6R4 1.52e-17 87 23 14 382 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q6LZC3 2.49e-17 86 24 12 378 1 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q8Z389 1.02e-16 84 23 14 382 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Salmonella typhi
A6UU98 2.26e-16 84 23 10 358 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
P67067 2.58e-16 83 24 16 403 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Shigella flexneri
P27829 2.58e-16 83 24 16 403 1 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Escherichia coli (strain K12)
P67066 2.58e-16 83 24 16 403 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Escherichia coli O157:H7
A6VK13 3.22e-16 83 24 14 383 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
P58591 5.7e-16 82 23 14 370 3 epsD NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q8ZAE4 7.21e-16 82 22 13 377 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Yersinia pestis
Q45410 9.04e-16 82 23 15 368 3 epsD NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase Ralstonia solanacearum
A6USK4 1.91e-14 77 24 16 389 3 wecC UDP-N-acetyl-D-mannosamine dehydrogenase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
P39861 4.82e-10 64 23 16 394 3 capL Protein CapL Staphylococcus aureus
Q04972 1.07e-06 53 24 14 376 3 vipA Vi polysaccharide biosynthesis protein VipA/TviB Salmonella typhi
G3XD94 5.98e-06 51 22 13 374 1 wbpA UDP-N-acetyl-D-glucosamine 6-dehydrogenase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15770
Feature type CDS
Gene -
Product nucleotide sugar dehydrogenase
Location 3502000 - 3503166 (strand: -1)
Length 1167 (nucleotides) / 388 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_970
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain
PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1004 Cell wall/membrane/envelope biogenesis (M) M UDP-glucose 6-dehydrogenase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG048973 UDP-glucose 6-dehydrogenase VF0560 Immune modulation

Protein Sequence

MKITISGTGYVGLSNGILLSQHNKVVALDINKEKVELLNKKISPISDKEIEEFLATKELDFTATLDKEFAYKDAEFVIIATPTDYDPKTNYFNTSSVESVIRDVLEYNPNTTMIIKSTIPVGFTKQMREKYHTDNIIFSPEFLREGRALYDNLYPSRIVIGEQSARAEKFAELLQQGALKKDIDVLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAQAYNLNARQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYESVPNNIIGAIVEANRTRKDFIADSIIAKSPKIVGVYRLIMKSGSDNFRSSSIQGIMKRIKAKGIEVVIYEPEMKEETFFNSKLIHNLDEFKAMSDVIITNRMASALNDVEEKVYTRDLFGND

Flanking regions ( +/- flanking 50bp)

AAAAAATATTTAGATGCGTTAAAAGAAATTATGTAACTTTAGGATAAAAAATGAAAATCACCATCTCAGGAACCGGCTATGTCGGTCTATCTAACGGGATACTCCTTTCCCAGCACAACAAAGTTGTTGCATTAGATATCAATAAAGAAAAAGTCGAACTATTAAACAAAAAAATCTCTCCTATCTCTGATAAAGAAATTGAAGAGTTTTTAGCTACTAAAGAACTCGACTTTACAGCAACTTTAGATAAAGAATTCGCTTATAAAGATGCTGAATTTGTTATCATTGCCACTCCTACCGATTATGATCCTAAAACTAACTACTTCAACACCTCTTCTGTGGAGTCGGTTATTCGTGATGTTTTAGAATATAATCCAAACACCACTATGATTATAAAATCAACCATTCCAGTTGGTTTTACTAAACAGATGAGAGAAAAATATCATACCGATAATATTATCTTCTCTCCTGAGTTCTTACGTGAAGGTCGTGCCCTTTACGATAACCTTTATCCATCTCGTATTGTGATTGGTGAGCAATCTGCAAGAGCAGAGAAATTTGCTGAGCTTTTACAACAAGGGGCATTAAAAAAAGATATTGATGTTCTTTTTACTGATTCTACAGAAGCAGAAGCCATTAAGTTATTTGCTAATACTTATCTCGCACTGCGTGTTGCTTATTTTAATGAACTCGATAGCTACGCCCAAGCTTACAATTTAAATGCAAGACAAATTATTGAAGGTGTCTGTTTAGATCCGCGTATTGGTAATCACTATAACAATCCATCATTTGGTTATGGTGGCTACTGCTTACCAAAAGATACGAAACAACTGTTAGCAAATTACGAATCCGTGCCTAATAATATTATTGGCGCCATTGTGGAAGCTAACCGCACCCGTAAAGACTTTATTGCTGATTCTATTATCGCTAAATCACCGAAGATTGTTGGTGTTTACCGTTTAATTATGAAATCAGGCTCTGATAATTTCCGCTCCTCTTCAATTCAAGGCATTATGAAGCGTATTAAAGCAAAAGGCATTGAAGTAGTGATTTATGAGCCAGAAATGAAAGAAGAGACTTTCTTTAACTCAAAATTAATTCATAATTTAGATGAGTTTAAAGCCATGTCTGATGTCATTATTACCAATAGAATGGCTTCAGCACTAAACGATGTTGAAGAAAAAGTTTATACTCGAGACCTCTTTGGTAACGATTAATTAATAGAAACGGATTAATTACGTAATGAAATATTTAGTCACAGGTGCTG