Homologs in group_2169

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16310 FBDBKF_16310 75.1 Morganella morganii S1 rfaF ADP-heptose--LPS heptosyltransferase RfaF
EHELCC_16345 EHELCC_16345 75.1 Morganella morganii S2 rfaF ADP-heptose--LPS heptosyltransferase RfaF
NLDBIP_16995 NLDBIP_16995 75.1 Morganella morganii S4 rfaF ADP-heptose--LPS heptosyltransferase RfaF
LHKJJB_16915 LHKJJB_16915 75.1 Morganella morganii S3 rfaF ADP-heptose--LPS heptosyltransferase RfaF
HKOGLL_16925 HKOGLL_16925 75.1 Morganella morganii S5 rfaF ADP-heptose--LPS heptosyltransferase RfaF
F4V73_RS17280 F4V73_RS17280 74.3 Morganella psychrotolerans rfaF ADP-heptose--LPS heptosyltransferase RfaF

Distribution of the homologs in the orthogroup group_2169

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2169

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37421 0.0 539 75 1 347 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37692 0.0 539 75 1 347 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P45042 1.2e-149 428 61 6 350 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7VNA4 1.44e-142 410 59 7 353 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q0P9A8 1.61e-19 91 24 10 357 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P0DX62 1.83e-17 85 23 10 354 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
Q9HUF5 2.58e-07 55 32 3 103 3 waaC Lipopolysaccharide heptosyltransferase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P24173 8.07e-07 53 28 5 150 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli (strain K12)
P0DX54 1.84e-06 52 29 3 114 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli O18:K1:H7 (strain RS218 / NMEC)
P26469 2.76e-06 52 26 2 163 3 waaC Lipopolysaccharide heptosyltransferase 1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57336 0.000345 45 23 7 241 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15700
Feature type CDS
Gene rfaF
Product ADP-heptose--LPS heptosyltransferase RfaF
Location 3487633 - 3488685 (strand: -1)
Length 1053 (nucleotides) / 350 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2169
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02843 lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG013400 ADP-heptose-LPS heptosyltransferase II VF0044 Immune modulation

Protein Sequence

MKIFVVGPSWVGDMMMSQSLYRTLKALHPAATIDVMAPAWCRPLLEKMPEVDNAIAMPLGHGALAIGERRRLGKQLKAKGYTHAYVLPNSFKSALVPFFAAIPKRTGWRGEMRYGLLNDLRPLDKAAFPLMVERYVALAYDKQQVHSAADLPKPLLWPKLAVSDKDITTTLKHFSLSTQRPAIGFCPGAEFGPAKRWPHYHYATLAQKLISEYGYQIFLFGSQKDKPAGEEIKHALTPDAQAACINLAGETSLEQAVNLIAACKAVVSNDSGLMHVAAALERPLVALYGPSSPDFTPPLSDKARVIRLITGYHKVRKGDAEQGYHQSLIDIQPEQVFSELEQLLATEPSL

Flanking regions ( +/- flanking 50bp)

GTGTTGCTCTTTATATGCAATGGTTAAATCAGGATAAGTAATCGCGGTTTATGAAAATTTTTGTGGTAGGGCCTTCTTGGGTTGGGGATATGATGATGTCCCAAAGCCTATATCGTACATTAAAAGCGTTACATCCTGCGGCAACTATTGATGTGATGGCACCCGCTTGGTGTCGTCCATTATTAGAGAAAATGCCCGAGGTCGATAATGCCATTGCTATGCCTTTAGGTCACGGTGCCTTAGCAATTGGTGAGCGTCGCCGCTTAGGTAAACAACTAAAAGCCAAAGGTTATACTCATGCTTATGTTTTACCTAACTCATTTAAATCCGCTTTAGTGCCGTTCTTTGCCGCTATTCCTAAACGTACTGGCTGGCGAGGAGAAATGCGTTATGGATTATTAAATGATTTACGCCCATTGGATAAAGCCGCATTTCCATTAATGGTAGAGCGTTATGTTGCGCTTGCTTACGATAAACAGCAGGTACATTCAGCCGCTGATTTACCAAAGCCGTTATTATGGCCAAAACTGGCTGTCTCTGACAAAGATATCACTACCACACTTAAGCACTTTTCATTATCTACACAGCGCCCTGCTATCGGTTTTTGTCCGGGGGCGGAATTTGGTCCTGCTAAACGCTGGCCTCATTACCACTACGCGACATTAGCCCAGAAACTTATTAGCGAATATGGCTATCAGATTTTCTTATTCGGTTCACAAAAAGATAAGCCTGCAGGGGAAGAGATCAAACACGCCTTAACCCCCGATGCCCAAGCTGCTTGTATTAATCTGGCCGGTGAGACTTCTCTTGAGCAAGCCGTTAACCTCATTGCCGCTTGTAAAGCCGTGGTCAGTAACGATTCTGGCTTAATGCATGTCGCCGCAGCATTAGAGCGTCCATTAGTTGCCCTTTATGGCCCAAGTAGTCCCGACTTTACCCCCCCGTTATCCGATAAAGCTCGTGTTATTCGTTTAATTACTGGCTATCACAAAGTGCGTAAAGGCGATGCTGAACAAGGTTATCACCAAAGCTTAATCGACATTCAACCGGAACAAGTCTTTAGCGAACTCGAGCAATTACTCGCTACGGAGCCATCGCTATGAAGCGGGTACTGATTGTTAAAACCTCTTCCATGGGGGATGTACTGCATACC