Homologs in group_2204

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16310 FBDBKF_16310 100.0 Morganella morganii S1 rfaF ADP-heptose--LPS heptosyltransferase RfaF
EHELCC_16345 EHELCC_16345 100.0 Morganella morganii S2 rfaF ADP-heptose--LPS heptosyltransferase RfaF
LHKJJB_16915 LHKJJB_16915 100.0 Morganella morganii S3 rfaF ADP-heptose--LPS heptosyltransferase RfaF
HKOGLL_16925 HKOGLL_16925 100.0 Morganella morganii S5 rfaF ADP-heptose--LPS heptosyltransferase RfaF
F4V73_RS17280 F4V73_RS17280 92.9 Morganella psychrotolerans rfaF ADP-heptose--LPS heptosyltransferase RfaF
PMI_RS15700 PMI_RS15700 75.1 Proteus mirabilis HI4320 rfaF ADP-heptose--LPS heptosyltransferase RfaF

Distribution of the homologs in the orthogroup group_2204

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2204

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37692 0.0 543 75 1 344 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P37421 0.0 542 76 1 344 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45042 1e-148 426 61 6 349 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7VNA4 1.15e-145 418 59 7 351 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q0P9A8 1.95e-25 107 24 10 351 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P0DX62 2.2e-20 93 22 11 352 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
Q9HUF5 1.02e-09 62 26 11 313 3 waaC Lipopolysaccharide heptosyltransferase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P24173 2.34e-06 52 26 3 149 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli (strain K12)
P26469 2.34e-06 52 27 5 148 3 waaC Lipopolysaccharide heptosyltransferase 1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9R9D5 8.64e-06 50 24 12 348 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli
P0DX54 9.04e-06 50 27 1 113 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli O18:K1:H7 (strain RS218 / NMEC)
Q57336 7.56e-05 47 20 12 308 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44011 0.000613 45 20 8 305 3 HI_0523 Putative glycosyltransferase HI_0523 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_16995
Feature type CDS
Gene rfaF
Product ADP-heptose--LPS heptosyltransferase RfaF
Location 11376 - 12437 (strand: 1)
Length 1062 (nucleotides) / 353 (amino acids)
In genomic island -

Contig

Accession ZDB_535
Length 62169 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2204
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02843 lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG013401 ADP-heptose-LPS heptosyltransferase II VF0044 Immune modulation

Protein Sequence

MKILVIGPSWVGDMMMSQSLYRTLKTRYPQATIDVMAPAWCRPLLAKMPEVDEAVAMPIGHGALALGERRRLGHSLRDNKYDRAYVLPNSLKSALVPFFAKIPVRTGWLGEMRYGLLNDHRKLDKAAFPLMVQRYVALAYDKADVPAAAALPQPLLWPKLIVRDEDIAESMAAFNISDHRPVVGFCPGAEFGPAKRWPHYHYGELAKKLIDERDFQIVLFGSEKDHAAGEEILAMLSDEQRENCLNLAGKTSLEQAVNLIAGCHAIITNDSGLMHVAAALDRPLVALYGPSSPDFTPPLSEKARVIRLITGYHKVRKGDAHEGYHQSLIDIQPEQVLSELDDLLKSSPPCAVC

Flanking regions ( +/- flanking 50bp)

TGTCCGTGAATATATGGCTTGGTTAAATCAGGGGAATTAATTAAACGCACATGAAAATTCTGGTGATCGGGCCGTCGTGGGTCGGTGACATGATGATGTCACAAAGCCTTTACCGTACCCTGAAAACACGTTATCCGCAGGCAACGATTGATGTGATGGCACCCGCGTGGTGCCGTCCGCTGCTGGCAAAAATGCCGGAAGTGGATGAGGCTGTCGCTATGCCGATCGGCCACGGTGCACTGGCACTCGGTGAGCGCCGCCGTCTCGGTCATTCCCTGCGTGATAATAAGTATGATCGTGCTTATGTGCTGCCGAACTCGTTAAAATCGGCACTGGTGCCGTTTTTTGCGAAAATCCCTGTGCGCACCGGCTGGCTGGGCGAAATGCGTTACGGCCTGCTCAACGATCACCGGAAGCTCGACAAAGCCGCTTTTCCGCTGATGGTGCAGCGTTATGTTGCCCTCGCGTATGATAAAGCGGATGTCCCTGCCGCCGCTGCTCTGCCGCAGCCTCTGCTGTGGCCGAAGCTGATAGTGCGGGATGAGGATATTGCCGAGAGCATGGCCGCGTTTAATATCAGTGATCACCGCCCGGTCGTCGGTTTTTGTCCGGGGGCTGAATTTGGCCCGGCCAAACGCTGGCCGCATTATCACTACGGTGAATTAGCGAAGAAACTAATTGATGAGCGTGATTTTCAGATAGTCCTGTTCGGCTCAGAAAAAGATCACGCTGCCGGTGAGGAAATCCTCGCCATGCTCAGTGATGAGCAACGCGAAAACTGTCTGAACCTGGCCGGAAAAACCTCACTGGAACAGGCGGTGAATCTGATCGCCGGTTGTCATGCCATTATCACCAATGATTCCGGTCTGATGCATGTAGCTGCCGCACTGGATCGCCCGCTGGTCGCCTTATACGGCCCGAGCAGCCCGGATTTCACGCCGCCGCTGTCAGAGAAAGCCCGTGTTATCCGCCTGATCACCGGTTATCACAAAGTCCGCAAAGGGGATGCCCATGAGGGCTATCATCAGAGCCTGATTGATATTCAGCCGGAGCAGGTTCTGTCTGAACTGGATGATTTGCTGAAGAGTTCCCCGCCATGCGCCGTGTGTTAATCGTCAAAACCTCGTCGATGGGGGATGTGCTGCATACCCTGCCCGCGCTG