Homologs in group_403

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16285 FBDBKF_16285 27.2 Morganella morganii S1 rfaQ putative lipopolysaccharide heptosyltransferase III
EHELCC_16320 EHELCC_16320 27.2 Morganella morganii S2 rfaQ putative lipopolysaccharide heptosyltransferase III
NLDBIP_17020 NLDBIP_17020 27.2 Morganella morganii S4 rfaQ putative lipopolysaccharide heptosyltransferase III
LHKJJB_16940 LHKJJB_16940 27.2 Morganella morganii S3 rfaQ putative lipopolysaccharide heptosyltransferase III
HKOGLL_16900 HKOGLL_16900 27.2 Morganella morganii S5 rfaQ putative lipopolysaccharide heptosyltransferase III
F4V73_RS17305 F4V73_RS17305 25.6 Morganella psychrotolerans rfaQ putative lipopolysaccharide heptosyltransferase III
PMI_RS15665 PMI_RS15665 26.5 Proteus mirabilis HI4320 rfaQ putative lipopolysaccharide heptosyltransferase III

Distribution of the homologs in the orthogroup group_403

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_403

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9R9D5 1.47e-13 73 23 7 281 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli
P25742 1.3e-12 71 23 6 277 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli (strain K12)
Q57336 1.21e-10 65 21 14 301 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37692 4.17e-09 60 23 14 351 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P37421 1.54e-08 58 25 13 315 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45042 3.78e-08 57 23 14 319 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7VNA4 2.34e-07 55 23 13 316 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15625
Feature type CDS
Gene -
Product glycosyltransferase family 9 protein
Location 3472089 - 3473090 (strand: 1)
Length 1002 (nucleotides) / 333 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_403
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Protein Sequence

MDPKNILVIAIARFGDTLLITPVIHALKERWPNARIHVLAHKRSACILQHNPDIFSVKPFSKKRARWRGWLPHKPYDLALVYGNDHSLVQYARRQSQHVVAFAENNQKQSDITWVAYPKELMVAQKERALLINALGIYPTNWQLRYSISSEEKQFAQQFIESNALINKHIIGLQLQSFPAKAYRDWPIEHFLQLAKQIMTHDEQAYFLLLGGKESQQVAIELAKKIGTEHCLALAGQVSMRENAAIMAHLSLYIGVDTGPTHLAGALGIPMVAMYHSYHPGCYLAPLQHSCCHIIQHPIALADASREDSMSDISVANVWHAVSDILNGIKVKQ

Flanking regions ( +/- flanking 50bp)

AGTGTATAGTCTGGAAAGTAAATGTATCATTTAAACTAAATAAAAAGTGTATGGATCCAAAAAACATATTGGTTATCGCAATTGCGCGTTTTGGTGATACGTTACTGATCACGCCGGTGATCCACGCACTAAAAGAGCGTTGGCCGAATGCCCGTATTCATGTATTGGCGCATAAACGCAGTGCCTGCATCTTGCAGCACAATCCTGATATTTTTAGTGTTAAGCCTTTCTCGAAAAAGCGCGCCCGTTGGCGAGGATGGTTACCCCATAAACCTTATGATTTAGCTTTGGTATATGGAAATGATCATTCATTAGTGCAGTATGCCCGCCGTCAATCACAACATGTAGTGGCTTTTGCTGAAAATAACCAAAAGCAATCAGACATAACATGGGTGGCTTACCCTAAAGAGTTAATGGTGGCACAAAAAGAGCGTGCTTTATTAATTAATGCGTTAGGAATTTACCCAACCAATTGGCAATTACGCTACTCTATTAGTTCAGAAGAAAAGCAATTTGCCCAACAGTTTATAGAGAGTAATGCATTAATTAATAAGCACATTATTGGCTTACAATTACAAAGTTTTCCTGCCAAAGCTTACCGAGATTGGCCTATAGAACACTTTTTGCAGTTAGCCAAACAGATAATGACTCATGACGAGCAGGCCTATTTTCTGTTATTAGGTGGGAAAGAGAGCCAACAAGTCGCCATTGAGCTGGCGAAAAAAATAGGTACTGAGCATTGTTTGGCATTAGCAGGGCAAGTCTCTATGCGCGAAAATGCTGCCATTATGGCGCATTTGTCGCTCTATATCGGGGTTGATACAGGGCCGACGCATTTAGCTGGCGCGTTAGGTATTCCGATGGTAGCTATGTATCACAGTTATCATCCCGGATGTTATTTAGCGCCATTACAACATTCATGTTGTCATATTATCCAACATCCTATTGCGTTAGCCGATGCAAGTCGTGAAGATAGTATGTCTGATATTTCTGTCGCCAATGTTTGGCATGCCGTTAGCGATATTTTAAATGGAATAAAGGTGAAACAGTAACTCATGAAGATTGGCTTAATTGATGTCACAATCACAATGTCTTATGGTGG