Homologs in group_403

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16285 FBDBKF_16285 84.9 Morganella morganii S1 rfaQ putative lipopolysaccharide heptosyltransferase III
EHELCC_16320 EHELCC_16320 84.9 Morganella morganii S2 rfaQ putative lipopolysaccharide heptosyltransferase III
NLDBIP_17020 NLDBIP_17020 84.9 Morganella morganii S4 rfaQ putative lipopolysaccharide heptosyltransferase III
LHKJJB_16940 LHKJJB_16940 84.9 Morganella morganii S3 rfaQ putative lipopolysaccharide heptosyltransferase III
HKOGLL_16900 HKOGLL_16900 84.9 Morganella morganii S5 rfaQ putative lipopolysaccharide heptosyltransferase III
PMI_RS15625 PMI_RS15625 25.6 Proteus mirabilis HI4320 - glycosyltransferase family 9 protein
PMI_RS15665 PMI_RS15665 56.7 Proteus mirabilis HI4320 rfaQ putative lipopolysaccharide heptosyltransferase III

Distribution of the homologs in the orthogroup group_403

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_403

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9R9D5 2.23e-86 267 40 4 342 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli
P25742 9.08e-83 258 41 6 344 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli (strain K12)
P37692 4.75e-17 84 28 10 324 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P37421 5.33e-15 78 27 11 326 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57336 2.62e-14 76 22 6 293 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HUF5 1.05e-13 74 25 8 305 3 waaC Lipopolysaccharide heptosyltransferase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0DX54 3.38e-11 67 25 8 299 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli O18:K1:H7 (strain RS218 / NMEC)
P24173 5.56e-11 66 25 8 299 1 waaC Lipopolysaccharide heptosyltransferase 1 Escherichia coli (strain K12)
P26469 1.57e-09 62 25 8 299 3 waaC Lipopolysaccharide heptosyltransferase 1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7VNA4 5e-09 60 26 17 341 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
O87333 1.35e-06 53 20 8 301 3 waaC Lipopolysaccharide heptosyltransferase 1 Campylobacter coli
Q0P9A8 3.32e-05 48 28 0 103 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P0DX62 0.000187 46 37 0 58 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17305
Feature type CDS
Gene rfaQ
Product putative lipopolysaccharide heptosyltransferase III
Location 93755 - 94828 (strand: -1)
Length 1074 (nucleotides) / 357 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_403
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02849 lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Protein Sequence

MQTASAPVQRILVIKLRHHGDTLLITPVINTLNANYPDAEVDVLLYKETAPMLSCHPGVSHIFGMDRQWRKEGLKRRIGHEWRLLKSLRQRQYDIVINLADQWYSAIVTRFTGARIRVGLDLWKRQNILWKKCYTLLADTSQEESMHTVEQNLNGLTPLNLPVTDNSVTMAYSEADRQQTENLLQRKHISGNYIVVQPTSRWFYKCWEEDKMSEVIQALADDGHQIVLSSGPDPRELQMVEAILAPCAQAVAEGKIVSVAGELALPQLAALIDRAKLYIGVDSVPMHMAAALKTPMVALFGPTKLIFWSPWQATGRIIKASDYGDQPDPDDVDTRADDRYLGAIPADVVIAAARSYL

Flanking regions ( +/- flanking 50bp)

TTTTTACAGATAACTTCCCTGATTTTTGCCAGATAATGAATGGAATGCCTATGCAAACAGCATCTGCCCCGGTACAGCGTATTTTAGTGATAAAGCTTCGTCATCACGGCGATACCCTGCTGATAACACCTGTAATTAATACTTTGAACGCTAATTACCCGGATGCTGAGGTCGATGTCCTGCTGTATAAAGAAACCGCGCCTATGCTGAGTTGCCATCCCGGGGTCAGTCATATTTTCGGGATGGATCGGCAGTGGCGTAAAGAAGGATTAAAGCGGCGTATCGGGCACGAATGGCGCTTGCTTAAATCATTGCGGCAGCGGCAGTATGACATTGTGATTAATCTGGCCGATCAGTGGTACAGCGCTATTGTTACCCGGTTTACCGGCGCCCGGATTCGGGTGGGGCTGGACTTATGGAAACGGCAAAATATTCTCTGGAAAAAATGCTATACCCTGCTGGCGGATACGTCTCAGGAAGAATCCATGCATACGGTTGAGCAGAATCTGAACGGATTAACCCCGCTGAATCTGCCGGTAACGGATAACTCTGTCACCATGGCATATTCTGAGGCTGACCGGCAGCAGACAGAAAACCTGTTGCAGCGCAAACATATCAGCGGCAATTATATTGTGGTTCAGCCGACATCCCGCTGGTTTTATAAGTGCTGGGAAGAAGACAAAATGAGTGAGGTGATTCAGGCGCTGGCAGATGACGGGCATCAGATTGTGCTCAGCAGCGGTCCTGATCCCCGCGAGTTACAGATGGTGGAGGCTATCCTTGCACCTTGTGCTCAGGCAGTGGCGGAAGGGAAAATTGTGTCGGTTGCCGGTGAACTGGCGCTGCCGCAGCTTGCGGCACTGATTGATCGGGCAAAACTGTATATTGGTGTGGATTCGGTCCCGATGCACATGGCTGCCGCACTGAAAACGCCGATGGTGGCACTGTTTGGTCCGACAAAACTAATTTTCTGGTCCCCCTGGCAGGCAACCGGCAGAATAATCAAAGCCTCGGATTACGGCGACCAGCCGGACCCGGATGATGTTGATACCCGGGCCGATGACCGTTATCTGGGTGCAATACCTGCGGACGTGGTGATTGCGGCAGCACGGAGTTACTTATGAAAGATCTGCGTTTAGCGATTGTCCGCCAGAAATACCGTCCTGACGGCGGC