Homologs in group_29

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01365 FBDBKF_01365 53.5 Morganella morganii S1 - Type VI secretion system tube protein Hcp
FBDBKF_01535 FBDBKF_01535 52.8 Morganella morganii S1 - Hcp family type VI secretion system effector
EHELCC_00010 EHELCC_00010 52.8 Morganella morganii S2 - Hcp family type VI secretion system effector
EHELCC_00180 EHELCC_00180 53.5 Morganella morganii S2 - Type VI secretion system tube protein Hcp
NLDBIP_03280 NLDBIP_03280 53.5 Morganella morganii S4 - Type VI secretion system tube protein Hcp
NLDBIP_03450 NLDBIP_03450 52.8 Morganella morganii S4 - Hcp family type VI secretion system effector
LHKJJB_04795 LHKJJB_04795 53.5 Morganella morganii S3 - Type VI secretion system tube protein Hcp
LHKJJB_19860 LHKJJB_19860 52.8 Morganella morganii S3 - Hcp family type VI secretion system effector
HKOGLL_02080 HKOGLL_02080 52.8 Morganella morganii S5 - Hcp family type VI secretion system effector
HKOGLL_02250 HKOGLL_02250 53.5 Morganella morganii S5 - Type VI secretion system tube protein Hcp
F4V73_RS16845 F4V73_RS16845 23.7 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS17415 F4V73_RS17415 50.3 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS18725 F4V73_RS18725 58.5 Morganella psychrotolerans - Hcp family type VI secretion system effector
PMI_RS03605 PMI_RS03605 59.2 Proteus mirabilis HI4320 - Hcp family type VI secretion system effector

Distribution of the homologs in the orthogroup group_29

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_29

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HI36 4e-29 107 38 5 167 1 hcpA Major exported protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P46855 5.55e-26 104 39 3 152 3 yhhZ Uncharacterized protein YhhZ Escherichia coli (strain K12)
P80693 1.24e-08 52 44 0 47 1 None Major exported protein (Fragment) Pseudomonas syringae pv. ribicola

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13890
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 3086170 - 3086649 (strand: -1)
Length 480 (nucleotides) / 159 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_29
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06887 uncharacterized protein - -

Protein Sequence

MANIIYMTLTGEQQGLISKGCSTYDSIGNKYQKGHEDEILVLAIRHSISRAQNSHHHPFEIVKPIDKSSPLLGVAISNNELIDCKLEFFRTSQNGAQEKYYSISLQQATIKNITYDYPNSISHNDRQPEEIILLDYRDITWRHLAASTSGYSIREESIY

Flanking regions ( +/- flanking 50bp)

CTGACTTAAGTTATATATAAAATATTGAAAATATAAAATAGGAAAATCACATGGCTAACATTATATACATGACCCTAACTGGGGAACAACAAGGATTAATATCTAAAGGGTGTTCAACATATGATTCAATTGGAAATAAATACCAAAAAGGTCATGAGGATGAAATACTTGTATTAGCTATTAGACATTCGATATCTCGAGCCCAAAACTCTCATCATCATCCATTCGAAATAGTAAAACCCATCGATAAATCATCGCCACTGCTAGGTGTCGCCATATCTAATAATGAGTTAATAGATTGCAAACTAGAATTTTTTAGAACTAGTCAAAATGGCGCTCAAGAAAAGTACTACAGTATATCATTACAACAGGCCACCATAAAAAATATAACTTATGATTATCCTAATTCAATATCTCATAATGACAGACAACCGGAAGAAATCATATTGTTAGATTATAGAGATATCACATGGAGGCATTTAGCGGCATCCACATCAGGATATAGTATTAGAGAAGAAAGTATCTACTAAGTAGATGCTTTCTTCTCTAATAGATAAGGTTTTATATCATTTATAATGTC