Homologs in group_1465

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09400 FBDBKF_09400 81.6 Morganella morganii S1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
EHELCC_10010 EHELCC_10010 81.6 Morganella morganii S2 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
NLDBIP_10355 NLDBIP_10355 81.6 Morganella morganii S4 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
LHKJJB_11000 LHKJJB_11000 81.6 Morganella morganii S3 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
HKOGLL_14060 HKOGLL_14060 81.6 Morganella morganii S5 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
F4V73_RS10565 F4V73_RS10565 78.1 Morganella psychrotolerans potD spermidine/putrescine ABC transporter substrate-binding protein PotD

Distribution of the homologs in the orthogroup group_1465

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1465

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A2C7 0.0 565 78 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C8 0.0 565 78 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Salmonella typhi
P0AFL0 0.0 561 78 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Shigella flexneri
P0AFK9 0.0 561 78 1 348 1 potD Spermidine/putrescine-binding periplasmic protein Escherichia coli (strain K12)
P45168 9.2e-133 385 52 2 360 3 potD-B Spermidine/putrescine-binding periplasmic protein 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44731 2.77e-130 379 54 3 351 3 potD-A Spermidine/putrescine-binding periplasmic protein 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9I6J1 2.34e-69 224 38 7 341 1 spuD Putrescine-binding periplasmic protein SpuD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02UB7 2.34e-69 224 38 7 341 1 spuD Putrescine-binding periplasmic protein SpuD Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9I6J0 2.6e-65 213 38 6 332 1 spuE Spermidine-binding periplasmic protein SpuE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31133 6.59e-60 199 35 9 341 1 potF Putrescine-binding periplasmic protein PotF Escherichia coli (strain K12)
Q9I0P5 4.76e-45 160 30 6 313 1 PA2592 Putrescine/agmatine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HY16 7e-41 149 30 7 305 1 potD Putrescine/cadaverine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KU25 2.21e-15 79 23 7 308 3 nspS Norspermidine sensor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I6R6 7.21e-09 60 20 7 279 1 PA0222 Gamma-aminobutyric acid-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P76108 1.12e-08 59 24 10 291 1 ydcS Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein Escherichia coli (strain K12)
P43951 7.77e-05 47 24 4 159 1 HI_0131 Uncharacterized protein HI_0131 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13475
Feature type CDS
Gene potD
Product spermidine/putrescine ABC transporter substrate-binding protein PotD
Location 2985066 - 2986109 (strand: -1)
Length 1044 (nucleotides) / 347 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1465
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13416 Bacterial extracellular solute-binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0687 Amino acid transport and metabolism (E) E Spermidine/putrescine-binding periplasmic protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11069 spermidine/putrescine transport system substrate-binding protein ABC transporters -

Protein Sequence

MKKWSSVLAASVMALSIGTASADDGKTIYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNESMYTKLKTYKDGAYDLVVPSTYFISKMSHEGMLQKIDKSKLSNFDNLDPSLLHKSFDPQNDYSIPYIWGATAIGINSDEVDVSSITSWADLWKPEYKDSLLLTDDAREVFQMALLKLGYSGNTTDPKQIEEAYKELQKLMPNVLAFNSDNPANPYMQGEVNLGMIWNGSAFIAREAGAPIELVWPKEGGIFWMDSLAIPANAKNVEGAHKLIDFLLRPEVAAKVAENIGYPTPNLAAQKLLPKAITKDSSLYPSEEIISKGEWQNDVGEATVLYESYYQKLKAGR

Flanking regions ( +/- flanking 50bp)

GGCGTTACGCCTATTTGATATTAACGCATCAACCACTGAAGGAAGCCTAAATGAAAAAGTGGTCCTCTGTACTTGCTGCCAGTGTAATGGCATTAAGTATTGGTACAGCATCGGCTGATGATGGTAAGACAATCTATTTCTATAACTGGACGGAATATGTACCGCCAGGATTGCTGGAACAGTTTACAAAAGAAACTGGGATTAAGGTGATTTACTCCACCTATGAATCTAACGAAAGCATGTATACCAAATTAAAAACCTATAAAGATGGTGCTTATGATTTGGTGGTTCCTTCAACTTATTTTATTTCTAAAATGAGTCATGAGGGGATGCTACAGAAGATTGATAAATCGAAGCTCAGTAATTTTGATAATCTTGACCCAAGTTTATTACATAAATCATTCGATCCTCAAAATGACTACTCAATCCCTTATATTTGGGGAGCGACTGCGATAGGGATTAATAGTGATGAAGTTGATGTAAGTAGCATTACTTCATGGGCTGATTTATGGAAACCGGAATATAAAGATAGTTTACTGTTAACGGATGATGCACGTGAAGTATTCCAAATGGCTTTATTAAAATTAGGCTATTCAGGTAATACCACAGATCCAAAACAGATTGAAGAAGCCTATAAAGAGTTACAAAAGCTGATGCCTAATGTACTGGCTTTTAATTCGGATAATCCTGCCAATCCTTATATGCAAGGAGAAGTGAATCTAGGGATGATCTGGAATGGCTCTGCATTTATTGCGCGAGAAGCCGGTGCTCCTATTGAGTTGGTATGGCCAAAAGAGGGCGGTATCTTCTGGATGGACAGCTTAGCTATTCCTGCAAATGCAAAAAATGTTGAAGGTGCGCATAAGCTTATCGACTTCTTATTACGCCCTGAAGTTGCTGCAAAAGTGGCTGAAAATATCGGCTATCCAACACCTAATTTAGCGGCACAAAAATTATTGCCAAAAGCTATCACAAAAGATAGCTCACTTTACCCTAGTGAAGAGATTATCAGTAAAGGCGAATGGCAAAATGATGTGGGTGAAGCGACGGTTTTATACGAAAGCTATTACCAAAAACTGAAAGCGGGTCGTTAATTAAGTTTATCAGTACCAAAAAGCCACCGTTAAACGGTGGCTTCTTATAT