Homologs in group_1461

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09345 FBDBKF_09345 34.7 Morganella morganii S1 sctW type III secretion system gatekeeper subunit SctW
EHELCC_10065 EHELCC_10065 34.7 Morganella morganii S2 sctW type III secretion system gatekeeper subunit SctW
NLDBIP_10410 NLDBIP_10410 34.7 Morganella morganii S4 sctW type III secretion system gatekeeper subunit SctW
LHKJJB_10945 LHKJJB_10945 34.7 Morganella morganii S3 sctW type III secretion system gatekeeper subunit SctW
HKOGLL_14005 HKOGLL_14005 34.7 Morganella morganii S5 sctW type III secretion system gatekeeper subunit SctW
F4V73_RS10620 F4V73_RS10620 33.2 Morganella psychrotolerans sctW type III secretion system gatekeeper subunit SctW

Distribution of the homologs in the orthogroup group_1461

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1461

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q04640 2.61e-23 102 29 6 245 1 mxiC Protein MxiC Shigella flexneri
Q56052 4.65e-19 90 33 2 211 3 invE Invasion protein InvE Salmonella typhi
P35671 4.88e-19 90 33 2 211 4 invE Invasion protein InvE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13280
Feature type CDS
Gene sctW
Product type III secretion system gatekeeper subunit SctW
Location 2946918 - 2947994 (strand: -1)
Length 1077 (nucleotides) / 358 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1461
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07201 HrpJ-like domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22511 type III secretion system protein - -

Protein Sequence

MIGPINTATSTNGASNSISKESQQDIEYKQPQINESENYQNQLIEISDDMSMVATLFSQRLGKLLDKKANKGQEALYIAEDGADEKLDKVMLQFRKSGRSLQELLQYLRKMFPDPSDLVMVLRELLRKKKLGAQLDAGIENEINRLLAGEEGKQIKAGINIALQAKAFAKLLCLDASVLRDLYRSYIILDIEPIYFFKMWIEKYDIKKCSIILNFLTQSLICDMKSLMPSCSQSSEFGYLLEKVNKLRLLYSFIEMNIENLVKEDLKSFIKEDDFYQLTINGMISPEQMEKYLISLMDNQWKGYFIKIKMRLLQQLKTMFNKYPELLYLSDDFRNECQIMIQKIIDNYIKKEQYQLRK

Flanking regions ( +/- flanking 50bp)

AAAAACATCTCAAGCGCTAAAACAAATTCAGGCATTTATGAGGTGATATTATGATCGGACCAATTAATACTGCAACTTCGACAAATGGTGCCAGCAACAGTATTAGTAAAGAAAGTCAGCAAGACATAGAATATAAGCAACCACAAATAAACGAAAGTGAAAATTATCAAAATCAATTAATAGAAATATCTGATGATATGTCTATGGTGGCAACTCTTTTTTCTCAGCGATTAGGAAAATTATTAGACAAAAAAGCCAATAAAGGGCAAGAAGCTTTATATATTGCAGAAGATGGTGCTGATGAGAAACTTGATAAGGTGATGCTTCAATTTAGAAAATCGGGGAGAAGTTTACAGGAATTATTGCAATATTTACGTAAAATGTTCCCTGATCCTAGTGATCTCGTTATGGTTTTACGAGAATTACTTAGGAAAAAAAAATTAGGTGCACAATTAGATGCAGGTATTGAAAATGAGATCAATAGGTTACTTGCAGGTGAGGAGGGTAAGCAAATTAAGGCGGGCATTAATATTGCTCTCCAAGCTAAAGCCTTTGCTAAATTACTTTGTTTAGATGCATCAGTATTAAGAGACCTTTACCGTAGTTACATTATTCTGGATATTGAACCTATTTATTTTTTCAAAATGTGGATAGAAAAATATGATATAAAAAAATGTTCAATTATTTTGAATTTTCTAACACAGAGCTTGATTTGTGATATGAAATCGTTAATGCCAAGTTGCTCCCAAAGTTCAGAGTTTGGTTATCTTTTGGAAAAGGTAAATAAATTACGATTATTATATAGCTTTATAGAAATGAATATAGAAAATTTAGTTAAAGAAGATTTAAAGAGTTTTATAAAAGAAGATGATTTTTATCAACTAACTATTAATGGAATGATATCTCCAGAACAAATGGAAAAATATTTAATATCACTTATGGATAATCAATGGAAAGGTTATTTTATTAAAATAAAAATGAGGTTGCTACAACAGTTAAAGACAATGTTCAATAAATATCCTGAATTATTATACTTATCTGATGATTTTAGAAATGAATGCCAAATAATGATACAAAAAATTATAGATAATTATATTAAGAAAGAGCAATATCAATTAAGAAAATAAAAAACAATTAATTATTGGCAAAGTTTATGATTTATAAGTTTCTATTAGCA