Homologs in group_1457

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09285 FBDBKF_09285 24.7 Morganella morganii S1 - IpaD/SipD/SspD family type III secretion system needle tip protein
EHELCC_10125 EHELCC_10125 24.7 Morganella morganii S2 - IpaD/SipD/SspD family type III secretion system needle tip protein
NLDBIP_10470 NLDBIP_10470 24.7 Morganella morganii S4 - IpaD/SipD/SspD family type III secretion system needle tip protein
LHKJJB_10885 LHKJJB_10885 24.7 Morganella morganii S3 - IpaD/SipD/SspD family type III secretion system needle tip protein
HKOGLL_13945 HKOGLL_13945 24.7 Morganella morganii S5 - IpaD/SipD/SspD family type III secretion system needle tip protein
F4V73_RS10680 F4V73_RS10680 27.9 Morganella psychrotolerans - hypothetical protein

Distribution of the homologs in the orthogroup group_1457

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1457

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56136 1.02e-11 68 23 6 244 3 sipD Cell invasion protein SipD Salmonella typhi
Q5PEC2 1.02e-11 68 23 6 244 3 sipD Cell invasion protein SipD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q56026 2.14e-10 64 24 6 242 1 sipD Cell invasion protein SipD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q03947 5.49e-07 54 23 6 247 3 ipaD Invasin IpaD Shigella dysenteriae
P18013 7.91e-06 50 22 5 240 1 ipaD Invasin IpaD Shigella flexneri

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13210
Feature type CDS
Gene -
Product IpaD/SipD/SspD family type III secretion system needle tip protein
Location 2933022 - 2934068 (strand: -1)
Length 1047 (nucleotides) / 348 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1457
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF06511 Type III secretion systems tip complex components

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K13287 invasin D Bacterial invasion of epithelial cells
Shigellosis		 -

Protein Sequence

MSNDISVYTEGINDLPHLNTRVNTDNYFENLLEDEDFLSWEPNREYQDMNYDNNRKNKFIEKLPDTDKYYYLDDDYNKTINDKNDFLNQFSNDLNDLRKKDNSYETDSLSDLFNNVKQSIVSGKADYLDVLKDIFSNYMNFVNELRQTISNLNKYQKAGSKEGTVNFDFKSFFNDLSNIRDKYKNPTGTVDDPFVFKSRLFFQHQKDGTYLRTIDGQEVHYSDLQQVNNAADALEKLLKGINGISVSIQRRGGEPDVDIDCRGRIDCTDLEKLLNDLSKKVSNTDDINQTEFELFRKTIDALDKKINTNLDELSKKYSTANSNYDNFVKIVSSTMNTLLEMAKGFLRF

Flanking regions ( +/- flanking 50bp)

AAAATCATATTTTTTTTATAAACTTTTATTTAATATAAAAGGTTAAGATTATGTCTAATGATATTTCAGTTTATACTGAGGGGATTAACGATTTACCTCATTTAAATACTAGAGTAAATACTGATAATTATTTCGAAAACCTGCTAGAAGATGAGGATTTTTTATCTTGGGAACCTAATCGGGAATATCAAGATATGAATTATGATAATAATAGAAAGAATAAATTTATAGAGAAGTTACCTGATACAGATAAATATTATTATTTAGATGATGATTATAATAAAACCATTAATGATAAAAATGATTTTTTAAATCAATTTTCTAATGATCTAAATGATCTTAGAAAAAAAGATAATAGTTATGAGACTGATTCGTTAAGTGATCTTTTTAATAATGTTAAACAATCTATTGTTTCAGGCAAAGCGGATTATCTAGATGTATTAAAGGATATCTTTTCTAACTACATGAATTTTGTCAATGAACTAAGGCAAACCATATCTAATTTAAATAAATATCAGAAAGCAGGAAGTAAAGAAGGTACGGTGAATTTTGATTTTAAATCTTTTTTTAATGACTTATCTAACATTAGAGATAAATATAAAAATCCAACAGGTACTGTCGACGATCCTTTTGTTTTTAAATCTCGTTTGTTTTTTCAACATCAAAAGGATGGGACATATTTACGCACCATTGATGGCCAAGAAGTTCATTATAGCGATCTACAACAGGTAAATAATGCTGCAGATGCGTTAGAAAAACTATTAAAAGGTATAAATGGAATAAGTGTATCAATACAAAGGCGTGGGGGGGAGCCTGATGTTGACATTGATTGTCGAGGTAGAATTGATTGTACTGACCTAGAAAAATTGCTAAATGATCTATCTAAGAAGGTATCTAACACGGATGATATTAATCAAACAGAATTTGAGTTATTCAGAAAAACCATCGACGCATTAGATAAGAAAATTAACACTAATTTAGATGAACTTTCCAAAAAATACAGTACAGCAAATAGTAATTATGATAATTTTGTTAAGATTGTCAGTAGTACAATGAACACTTTATTAGAAATGGCAAAAGGATTTTTACGTTTCTGATATTTTATTAATAGATTATTTTTTGCATATAATATGGATTTATGAATATT