Homologs in group_1457

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09285 FBDBKF_09285 34.7 Morganella morganii S1 - IpaD/SipD/SspD family type III secretion system needle tip protein
EHELCC_10125 EHELCC_10125 34.7 Morganella morganii S2 - IpaD/SipD/SspD family type III secretion system needle tip protein
NLDBIP_10470 NLDBIP_10470 34.7 Morganella morganii S4 - IpaD/SipD/SspD family type III secretion system needle tip protein
LHKJJB_10885 LHKJJB_10885 34.7 Morganella morganii S3 - IpaD/SipD/SspD family type III secretion system needle tip protein
HKOGLL_13945 HKOGLL_13945 34.7 Morganella morganii S5 - IpaD/SipD/SspD family type III secretion system needle tip protein
PMI_RS13210 PMI_RS13210 27.9 Proteus mirabilis HI4320 - IpaD/SipD/SspD family type III secretion system needle tip protein

Distribution of the homologs in the orthogroup group_1457

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1457

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10680
Feature type CDS
Gene -
Product hypothetical protein
Location 264341 - 265819 (strand: 1)
Length 1479 (nucleotides) / 492 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1457
Orthogroup size 7
N. genomes 7

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Genomic region

Protein Sequence

MADNIALNFDRIAPEILKENNISNTDSNSSVAKKVTDQYENIVLEREQQERLDTITNDLFEIRSILYSGNSSESDIDTALSRYKNLMTKENLAFLYSIDRKWSNDAISINSHIHEYEVSKELVTHEYYEEQLHVLAKYSHDISLKYHREGMSGYMEFYKETTKILNDYGSYIGDIIDDGKKTLLKEHKLINDLHSVTKKYIPDLDADTGFIYKSDIEVVPGKINGLYNVVIDGKIIESDVSYKSAVTSLNGFFSAFDKPINGTKFIKQIIPENDKDGNVIRLTGKVRQFVVPDNVFTYLEINNYAKDYESNVSGSLTELNKINIFINNEYIDAINKINLKEYAGLKGNIKDALDNSRISSGGDHITIYQKITYDYDGWKAKIIVRYEEISKSEYDKYMRDDPEVYVKTWAKWKPTVTSERIPLNADTSIKVSSTTLNILTTRLDGMKKELQLSIDEFSQHYSTKNSNYENMVKNITNMILDLFNEIKSMLRN

Flanking regions ( +/- flanking 50bp)

ACAAGACAAACAGCAGGCTGAGTATTACCTGGCATTAGTGGAGAATAAAGATGGCTGACAATATAGCATTAAATTTTGATCGGATAGCACCGGAAATACTGAAAGAAAATAATATATCAAATACAGACAGTAATAGTTCCGTTGCGAAAAAAGTAACCGATCAGTACGAGAATATTGTTCTTGAACGTGAACAGCAGGAGAGGCTGGATACGATCACCAATGATCTCTTTGAAATAAGAAGTATACTCTATAGTGGAAATTCTTCAGAGTCCGATATTGATACAGCATTGAGTCGTTATAAAAATCTGATGACGAAAGAAAACCTGGCTTTTCTTTATAGTATTGATCGGAAATGGTCGAATGATGCAATTTCTATTAATTCACATATTCATGAGTATGAAGTTTCAAAGGAATTAGTTACACATGAATATTATGAGGAACAGTTGCATGTTTTAGCCAAATATAGCCATGATATCAGTTTGAAATATCACCGGGAAGGTATGTCCGGTTATATGGAGTTTTATAAAGAAACAACAAAGATACTTAATGACTACGGGAGTTACATAGGGGATATCATTGATGATGGTAAAAAAACGCTATTAAAGGAACATAAGCTTATCAATGATCTCCATAGCGTCACAAAGAAATATATTCCTGATTTAGATGCAGATACCGGATTTATCTATAAGAGTGATATTGAGGTGGTTCCGGGTAAAATAAATGGGTTATATAATGTTGTTATTGATGGAAAAATTATTGAATCTGATGTCAGTTATAAAAGTGCAGTAACTTCACTAAATGGTTTTTTTTCTGCTTTTGATAAACCAATTAATGGCACGAAATTTATTAAGCAAATAATACCTGAGAACGATAAGGATGGTAATGTAATAAGGTTAACTGGAAAAGTACGCCAGTTTGTTGTGCCGGATAATGTGTTTACATATTTAGAAATAAATAACTATGCAAAAGACTATGAAAGTAATGTCAGTGGTTCGCTTACAGAACTTAATAAAATAAATATTTTTATAAACAATGAATATATTGATGCTATAAATAAAATAAATTTAAAGGAATATGCTGGATTAAAAGGCAATATCAAAGATGCATTAGATAATAGTCGTATTTCGTCAGGTGGGGATCATATAACAATCTATCAAAAAATAACATATGACTATGATGGATGGAAAGCAAAGATTATTGTCAGATATGAAGAAATTTCAAAATCAGAATATGATAAATACATGAGAGATGACCCTGAGGTTTATGTTAAAACCTGGGCGAAATGGAAGCCAACAGTTACGTCAGAACGTATTCCGTTAAATGCTGATACATCTATTAAAGTTAGCTCAACTACTCTAAATATACTCACTACCAGATTAGATGGAATGAAGAAAGAGCTTCAGCTATCGATAGATGAATTTTCTCAGCATTATAGTACAAAAAATAGTAACTATGAAAATATGGTTAAGAATATTACTAATATGATTCTTGATTTATTTAATGAAATTAAAAGCATGCTAAGAAATTAGATTTTGTAGTATTAACTTAGGAAATAATATGGATATTAATTCTAATCTAT