Homologs in group_810

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03825 FBDBKF_03825 56.3 Morganella morganii S1 - transcriptional regulator
EHELCC_06710 EHELCC_06710 56.3 Morganella morganii S2 - transcriptional regulator
NLDBIP_07035 NLDBIP_07035 56.3 Morganella morganii S4 - transcriptional regulator
LHKJJB_06570 LHKJJB_06570 56.3 Morganella morganii S3 - transcriptional regulator
HKOGLL_04360 HKOGLL_04360 56.3 Morganella morganii S5 - transcriptional regulator
F4V73_RS11045 F4V73_RS11045 56.3 Morganella psychrotolerans - transcriptional regulator

Distribution of the homologs in the orthogroup group_810

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_810

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACU9 9.02e-67 205 51 1 191 4 yjdC HTH-type transcriptional regulator YjdC Shigella flexneri
P0ACU7 9.02e-67 205 51 1 191 4 yjdC HTH-type transcriptional regulator YjdC Escherichia coli (strain K12)
P0ACU8 9.02e-67 205 51 1 191 4 yjdC HTH-type transcriptional regulator YjdC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12600
Feature type CDS
Gene -
Product transcriptional regulator
Location 2792823 - 2793395 (strand: 1)
Length 573 (nucleotides) / 190 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_810
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MQREALLDHVLIQLEQHGLAATLPELLQGFDITESELQPFWPDKDALIFDCLRHHGQQIDIWQRQVMLDDTLTTEQKLLARYDQLAMRLEKNRFPGCLFVAACSAYPDEHSQIHQLSQRQKQSSFEYSRMLLRKLDLEDSELVAKQMELILEGCLSRLMVNRRADDITTAKLLAQDILKIAQCRKNGALS

Flanking regions ( +/- flanking 50bp)

AATCTGTTAATTATGGTGCTCTTGCGACACTATGATTTAAGGAGATTTCCGTGCAACGTGAAGCATTATTAGACCACGTACTTATCCAATTAGAGCAACATGGGCTTGCCGCTACGTTGCCTGAGTTATTGCAGGGATTTGATATTACTGAATCTGAACTCCAACCTTTTTGGCCTGATAAAGACGCGTTAATTTTTGATTGTCTGCGCCATCATGGACAGCAAATTGATATTTGGCAACGCCAAGTGATGTTAGATGATACGCTGACCACAGAGCAAAAATTACTAGCACGTTACGATCAGCTGGCTATGCGCTTAGAAAAAAATCGTTTCCCAGGCTGTTTGTTTGTTGCTGCTTGTAGTGCTTATCCTGATGAGCATTCACAAATCCATCAGTTAAGCCAGCGCCAAAAGCAAAGCTCATTTGAATACTCTAGAATGCTACTACGCAAGCTTGATCTTGAAGATAGTGAGTTAGTTGCTAAACAAATGGAACTCATCTTAGAAGGCTGTTTAAGTCGCTTAATGGTCAATCGTCGTGCTGACGATATCACGACAGCAAAACTATTAGCTCAAGATATTCTTAAAATCGCCCAATGTCGTAAAAATGGTGCGCTAAGCTGATTGCATATCAATATTGCAATTAGAGTAATTGCTCATTTCGTTCTCTTATT