Homologs in group_878

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03825 FBDBKF_03825 100.0 Morganella morganii S1 - transcriptional regulator
NLDBIP_07035 NLDBIP_07035 100.0 Morganella morganii S4 - transcriptional regulator
LHKJJB_06570 LHKJJB_06570 100.0 Morganella morganii S3 - transcriptional regulator
HKOGLL_04360 HKOGLL_04360 100.0 Morganella morganii S5 - transcriptional regulator
F4V73_RS11045 F4V73_RS11045 87.4 Morganella psychrotolerans - transcriptional regulator
PMI_RS12600 PMI_RS12600 56.3 Proteus mirabilis HI4320 - transcriptional regulator

Distribution of the homologs in the orthogroup group_878

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_878

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACU9 4.28e-71 216 54 1 191 4 yjdC HTH-type transcriptional regulator YjdC Shigella flexneri
P0ACU7 4.28e-71 216 54 1 191 4 yjdC HTH-type transcriptional regulator YjdC Escherichia coli (strain K12)
P0ACU8 4.28e-71 216 54 1 191 4 yjdC HTH-type transcriptional regulator YjdC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_06710
Feature type CDS
Gene -
Product transcriptional regulator
Location 76465 - 77037 (strand: -1)
Length 573 (nucleotides) / 190 (amino acids)
In genomic island -

Contig

Accession ZDB_216
Length 269970 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_878
Orthogroup size 7
N. genomes 7

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Genomic region

Protein Sequence

MQREDVLNQALSLLENHGLLMSEATLNDNLDIDPERLRIFWPTRNDLLYDCLRYHGNQIDIWQRRILLDESLSCEDKLLAHYTALAERVRENRFPGCLFIAASSAFPDADHPIHQLSRQQKQSAFAFTTELLRELDIDDCDMVARQLELILEGCLSKLLISRSTDDIATARRLAEDVLTIARCRKNGALS

Flanking regions ( +/- flanking 50bp)

CAGCACTCACGTTATTCTGGATCATATGCCTTTATCAGGGAGAACCTGCTGTGCAACGTGAAGACGTCCTCAATCAGGCACTGAGTCTGCTGGAAAACCACGGCCTTCTGATGTCTGAAGCCACCCTCAACGATAACCTGGACATTGATCCCGAACGCCTGCGGATTTTCTGGCCGACCCGTAATGACCTGCTCTACGACTGCCTGCGTTACCACGGTAATCAGATTGATATCTGGCAGCGCCGCATTCTGCTGGATGAGTCGCTGTCCTGTGAAGATAAACTGCTTGCCCATTACACGGCACTGGCGGAACGTGTCCGCGAAAACCGTTTTCCGGGATGTCTGTTTATTGCGGCCAGCAGCGCCTTTCCTGATGCGGATCACCCTATCCATCAGTTATCCCGCCAGCAGAAACAAAGTGCCTTTGCATTTACCACAGAGCTGCTCAGAGAGCTGGATATTGATGATTGCGATATGGTGGCCCGTCAGCTGGAACTGATTCTGGAAGGATGCCTGAGCAAACTGCTGATATCCCGCAGTACCGATGATATCGCCACCGCCCGGCGGCTGGCAGAAGATGTGCTGACTATCGCCCGTTGCCGTAAAAACGGCGCACTCAGCTGATTTATTCACCACATGCATAAATTGCGTCCGCATTCTGCATAAAAAGAGCA