Homologs in group_3906

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS18555 PMI_RS18555 29.1 Proteus mirabilis HI4320 - VirB3 family type IV secretion system protein

Distribution of the homologs in the orthogroup group_3906

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3906

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P18004 5.14e-55 207 26 28 843 1 traC Protein TraC Escherichia coli (strain K12)
P54910 1.75e-08 62 23 21 460 3 trbE Conjugal transfer protein TrbE Rhizobium radiobacter
P55399 4.76e-05 50 21 20 488 3 trbEB Probable conjugal transfer protein TrbE part 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12165
Feature type CDS
Gene traC
Product type IV secretion system protein TraC
Location 2689243 - 2691642 (strand: -1)
Length 2400 (nucleotides) / 799 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3906
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF11130 TraC protein
PF19044 TraG P-loop domain
PF19357 Family of unknown function (DUF5934)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3451 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirB4 component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12063 conjugal transfer ATP-binding protein TraC - -

Protein Sequence

MKASLYSGQRASELLPVLAYSDDEQLFFMEDQSVGFGFLCDPLPGGDESVADRVNVLLNNDWPKDTLLQFGLYASPDIQTDLQRMMGLRHRQSDPLLRASIRKRADFLDGGTVQPIEESTQTQVRNFQLIVTCKLPLESPIPTERELSRASALRASFSQALATVGFRVTEMTDRNWLAALSAQLNWGKDASWRNPSPIRSEADKPLREQVLDYDRAIKVDSQGLMLGDYRVKTLSFKRLPERIWFGHAASFAGDMMTGSRGLRGSFLLNVTIHFPSAEAMRSRLETKRQWAVNQAYGPMLKFVPVLAAKKKGFDVLFEALQEGDRPIRANMTLTLFSPTEEASISSVSNARTYFKELGFELMEDKYFCLPIFLNALPFGADRQAMNDLFRFKTMATRHVIPLLPLFADWKGTGTPVINFVSRNGQIMSVSLYDSGSNYNCCIAAQSGSGKSFLVNEIISSYLSEGGQCWVIDVGRSYEKLCEVYDGEFLQFGRDSGICLNPFEIVEDYDEEADVLVGLLAAMAAPTQSLTDFQMANLKRQTRELWEKKGRAMLVDDVAEALKNHDDRRVQDVGEQLYPFTTQGEYGRFFNGHNNIRFKNRFTVLELEELKGRKHLQQVVLLQLIYQIQQEMYLGERDRRKIVFIDEAWDLLTQGDVGKFIETGYRRFRKYGGSAVTVTQSVNDLYDSPTGKAIAENSANMYLLGQKAETINALKKEGRLPLGEGGYEYLKTVHTVTGVYSEIFFITEMGTGIGRLIVDPFHKLLYSSRAEDVNAIKQLTRKGLSVADAISQLLKERGYE

Flanking regions ( +/- flanking 50bp)

ATCAGCCGAGGCCGTCCTTATGATCTTTCTGCTTGGTTGGAGGGGCGTTAATGAAAGCCTCTCTGTATTCAGGGCAACGCGCTTCTGAGCTATTGCCAGTATTGGCCTATTCAGACGATGAGCAACTGTTTTTCATGGAAGACCAGAGTGTTGGCTTTGGTTTTCTATGTGACCCATTGCCGGGTGGTGATGAGTCTGTTGCAGACAGGGTTAATGTTCTTCTCAACAACGACTGGCCAAAAGACACTTTGCTGCAATTTGGCCTGTACGCCTCGCCTGATATTCAAACCGACCTTCAGCGCATGATGGGCTTACGGCATCGTCAATCCGATCCATTACTCAGGGCGTCGATACGCAAACGTGCGGATTTTCTCGATGGGGGCACGGTTCAACCGATAGAAGAATCGACCCAGACTCAGGTACGCAACTTTCAACTGATAGTCACCTGCAAATTGCCTTTGGAAAGTCCTATACCGACTGAGCGTGAATTAAGTCGAGCATCCGCGCTTCGGGCTTCTTTCTCTCAAGCGCTGGCAACGGTTGGTTTTCGCGTCACTGAGATGACTGACCGAAACTGGCTCGCGGCATTAAGTGCGCAGCTTAACTGGGGAAAAGATGCTTCCTGGCGTAATCCATCACCAATCCGCAGTGAGGCAGATAAGCCACTTCGAGAGCAAGTGTTGGATTATGACCGGGCTATCAAAGTGGATAGTCAAGGTCTGATGCTGGGTGATTACCGAGTTAAAACCCTATCGTTTAAGCGCCTGCCTGAGCGGATCTGGTTTGGTCATGCCGCAAGTTTTGCGGGCGACATGATGACGGGCAGTCGCGGTTTACGCGGCAGCTTTTTGCTAAATGTCACCATTCACTTTCCCTCAGCTGAGGCGATGCGATCTCGTTTAGAGACGAAGCGTCAATGGGCGGTCAATCAGGCCTATGGCCCGATGCTCAAGTTTGTGCCGGTGCTTGCAGCCAAGAAAAAGGGATTTGATGTTCTTTTTGAAGCCTTGCAAGAAGGTGATCGTCCTATTCGGGCAAATATGACTTTGACGCTGTTTTCACCAACGGAAGAGGCGTCCATCAGCTCTGTTTCAAATGCTCGAACTTATTTCAAAGAACTCGGATTTGAGCTGATGGAAGACAAGTACTTCTGTTTGCCAATTTTCTTGAATGCCCTGCCATTTGGTGCCGACCGCCAGGCGATGAACGACTTGTTTCGATTCAAGACCATGGCGACACGGCATGTGATCCCTCTGTTGCCTTTGTTTGCGGATTGGAAAGGCACGGGCACGCCAGTGATTAACTTTGTTTCCCGTAATGGTCAGATCATGAGTGTGTCCCTTTATGACTCGGGCAGTAATTACAACTGTTGCATCGCGGCGCAATCGGGGTCGGGTAAGTCATTCCTGGTGAACGAAATCATCTCCTCCTACTTATCTGAAGGCGGCCAATGCTGGGTGATTGATGTTGGCCGCTCTTATGAAAAGCTGTGTGAAGTCTATGATGGTGAGTTCTTACAGTTCGGCCGGGACAGTGGCATTTGCTTGAATCCGTTTGAAATCGTTGAGGACTATGACGAAGAAGCGGATGTGTTGGTTGGGTTATTGGCCGCAATGGCCGCACCTACGCAGTCATTAACCGATTTTCAGATGGCCAACCTAAAACGTCAGACCCGTGAACTGTGGGAGAAAAAAGGTCGTGCGATGTTGGTTGATGATGTGGCAGAGGCTTTGAAAAATCACGATGACCGTCGTGTGCAAGACGTGGGTGAGCAGCTCTATCCGTTTACGACACAAGGCGAATATGGCCGCTTCTTTAATGGCCACAACAATATTCGCTTCAAAAACCGTTTCACCGTTCTGGAGTTAGAAGAGCTCAAGGGGCGTAAGCACCTGCAACAAGTGGTGTTGCTTCAGCTTATCTACCAAATCCAACAAGAGATGTACTTAGGTGAGCGGGATCGTCGCAAGATTGTGTTCATTGACGAAGCCTGGGATCTGCTGACTCAAGGTGATGTCGGTAAGTTCATCGAAACCGGTTACCGTCGATTTCGAAAATATGGCGGCAGTGCTGTAACAGTAACGCAGTCGGTCAACGATTTATACGACAGCCCTACAGGTAAAGCCATCGCTGAAAACTCGGCCAATATGTACCTGCTTGGCCAAAAAGCCGAAACCATCAACGCGCTCAAAAAAGAAGGCCGTTTGCCATTAGGTGAAGGCGGCTACGAATACCTGAAAACGGTTCATACCGTCACGGGTGTCTATTCCGAGATTTTCTTTATTACCGAGATGGGCACCGGGATTGGCCGCCTTATCGTCGATCCGTTTCACAAGCTGTTGTACTCGTCCCGTGCAGAAGATGTAAACGCGATTAAGCAGTTAACGCGCAAAGGCCTTTCTGTTGCTGATGCCATCTCCCAGTTGTTAAAGGAGCGAGGCTATGAATAAGACCACGCTTTGGCCATTTATGGCCTCTATTACTTTGTCTATTGCTGGTA