Homologs in group_2282

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17530 FBDBKF_17530 90.2 Morganella morganii S1 rpoD RNA polymerase sigma factor RpoD
EHELCC_17425 EHELCC_17425 90.2 Morganella morganii S2 rpoD RNA polymerase sigma factor RpoD
NLDBIP_17770 NLDBIP_17770 90.2 Morganella morganii S4 rpoD RNA polymerase sigma factor RpoD
LHKJJB_17690 LHKJJB_17690 90.2 Morganella morganii S3 rpoD RNA polymerase sigma factor RpoD
HKOGLL_17700 HKOGLL_17700 90.2 Morganella morganii S5 rpoD RNA polymerase sigma factor RpoD
F4V73_RS16710 F4V73_RS16710 88.6 Morganella psychrotolerans rpoD RNA polymerase sigma factor RpoD

Distribution of the homologs in the orthogroup group_2282

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2282

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A2E3 0.0 1075 87 1 618 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E4 0.0 1075 87 1 618 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhi
P00579 0.0 1055 87 2 618 1 rpoD RNA polymerase sigma factor RpoD Escherichia coli (strain K12)
P32001 0.0 994 78 2 620 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57163 0.0 985 79 1 618 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89B10 0.0 957 74 2 620 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O24744 0.0 894 73 3 618 3 rpoD RNA polymerase sigma factor RpoD Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P43766 0.0 797 66 5 632 3 rpoD RNA polymerase sigma factor RpoD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52326 0.0 784 66 2 613 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
P26480 0.0 768 66 5 618 1 rpoD RNA polymerase sigma factor RpoD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52327 0.0 739 63 5 618 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas putida
Q83BB6 0.0 695 59 3 606 1 rpoD RNA polymerase sigma factor RpoD Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q9PDM9 0.0 690 59 4 621 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain 9a5c)
Q87DT7 0.0 689 59 4 621 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q8P4H2 0.0 674 59 3 617 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q8PG33 0.0 667 58 2 617 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas axonopodis pv. citri (strain 306)
P52325 0.0 629 54 5 621 3 rpoD RNA polymerase sigma factor RpoD Neisseria gonorrhoeae
Q59753 3.93e-179 526 47 12 658 3 rpoD RNA polymerase sigma factor RpoD Rhizobium meliloti (strain 1021)
Q2K619 3.6e-177 521 47 13 663 1 rpoD RNA polymerase sigma factor RpoD Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P52324 5.53e-177 520 49 8 634 3 rpoD RNA polymerase sigma factor RpoD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P33452 2.43e-176 519 48 15 661 3 rpoD RNA polymerase sigma factor RpoD Agrobacterium fabrum (strain C58 / ATCC 33970)
P17531 2.29e-170 504 46 11 634 3 rpoD RNA polymerase sigma factor RpoD Myxococcus xanthus
Q1RKH7 3.51e-153 458 44 13 623 3 rpoD RNA polymerase sigma factor RpoD Rickettsia bellii (strain RML369-C)
Q92FZ8 8.09e-150 449 44 13 613 3 rpoD RNA polymerase sigma factor RpoD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P43344 4.77e-149 432 97 0 215 3 rpoD RNA polymerase sigma factor RpoD (Fragment) Serratia marcescens
Q68VQ5 6.36e-149 447 42 12 633 3 rpoD RNA polymerase sigma factor RpoD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q4UJT1 2.18e-148 446 44 11 614 3 rpoD RNA polymerase sigma factor RpoD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P33451 5.16e-148 445 44 11 610 3 rpoD RNA polymerase sigma factor RpoD Rickettsia prowazekii (strain Madrid E)
P0CZ15 8.33e-142 430 63 3 352 2 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus
P59117 5.63e-130 397 36 11 622 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
P61540 5.63e-130 397 36 11 622 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
O33662 9.11e-115 350 64 1 270 3 sigA RNA polymerase sigma factor SigA Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P52329 1.28e-113 347 68 0 238 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
P52329 3.08e-08 59 29 3 134 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
P0A4J0 3.33e-113 346 63 1 270 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4J0 4.3e-07 56 32 3 134 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4I9 3.33e-113 346 63 1 270 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P0A4I9 4.3e-07 56 32 3 134 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q04506 8.49e-113 345 67 0 244 3 sigA RNA polymerase sigma factor SigA Lactococcus lactis subsp. lactis (strain IL1403)
P58290 1.97e-112 344 67 0 244 3 sigA RNA polymerase sigma factor SigA (Fragment) Lactococcus lactis subsp. cremoris
P06224 4.2e-112 343 68 0 238 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
P06224 6.45e-10 65 29 2 132 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
Q99TT5 2.92e-111 341 67 0 238 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
Q99TT5 4.49e-12 71 34 2 129 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
O66381 3.95e-111 341 64 1 260 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O66381 6.83e-13 74 34 2 130 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P0A0I9 4.84e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
P0A0I9 4.25e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
Q6G905 4.84e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6G905 4.25e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6GGD8 4.84e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
Q6GGD8 4.25e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
P0A0I8 4.84e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
P0A0I8 4.25e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFJ9 4.84e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
Q5HFJ9 4.25e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
P0A0J0 4.84e-111 340 66 0 238 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P0A0J0 4.25e-12 71 34 2 129 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q8CP24 8.57e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q8CP24 8.66e-12 70 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNY7 8.57e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5HNY7 8.66e-12 70 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P52328 3.97e-110 338 67 0 238 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
P52328 1.98e-06 53 29 2 127 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
P52331 1.3e-109 337 59 2 280 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P52331 7.16e-10 64 35 3 132 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q92BQ6 1.46e-109 337 59 2 280 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q92BQ6 8.11e-10 64 35 3 132 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
O83506 4.14e-109 343 36 14 643 3 rpoD RNA polymerase sigma factor RpoD Treponema pallidum (strain Nichols)
Q9Z7F0 7e-106 334 61 0 269 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
Q9Z7F0 1.34e-13 77 33 5 162 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
P56835 2.32e-105 333 62 0 265 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P56835 7.33e-15 81 33 5 162 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P18333 5.69e-105 332 62 0 265 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P18333 1.32e-14 80 34 5 158 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P33656 8.36e-103 319 64 1 260 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P33656 5.69e-10 65 35 3 130 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P18183 4.59e-102 322 59 0 252 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P77951 6.2e-102 322 59 0 252 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
B1VXR4 6.2e-102 322 59 0 252 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
P77994 1.04e-100 315 56 2 281 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P77994 0.000177 48 27 2 123 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P55993 3.2e-100 322 38 13 557 1 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain ATCC 700392 / 26695)
P9WGI1 2.21e-97 310 59 0 239 1 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI0 2.21e-97 310 59 0 239 3 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A603 2.21e-97 310 59 0 239 3 sigA RNA polymerase sigma factor SigA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q72L95 4.71e-96 303 62 3 248 1 sigA RNA polymerase sigma factor SigA Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q9EZJ8 1.5e-95 303 60 4 260 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
Q9EZJ8 0.000379 47 50 0 38 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
P52323 1.25e-94 306 51 0 278 3 rpoD RNA polymerase sigma factor RpoD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q9ZMY3 7.18e-94 306 54 1 260 3 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain J99 / ATCC 700824)
P26683 2.09e-93 295 58 2 248 1 sigA RNA polymerase sigma factor SigA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P38023 6.22e-91 290 59 1 237 3 sigA1 RNA polymerase sigma factor SigA1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52322 3.4e-90 288 56 2 256 3 sigA RNA polymerase sigma factor SigA Microcystis aeruginosa
P74565 1.24e-89 287 58 1 237 1 sigA RNA polymerase sigma factor SigA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P18182 1.58e-86 278 53 0 241 1 hrdA RNA polymerase principal sigma factor HrdA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P27785 1.54e-83 267 50 1 253 3 sigA RNA polymerase sigma factor SigA Kitasatospora aureofaciens
P9WGI5 1.62e-83 268 47 2 272 1 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI4 1.62e-83 268 47 2 272 3 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P33118 1.64e-83 268 48 3 272 3 sigB RNA polymerase sigma factor SigB Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
P47491 1.33e-70 239 49 4 254 3 sigA RNA polymerase sigma factor SigA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q03066 6.04e-70 235 46 1 244 3 sigC RNA polymerase sigma-C factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P18249 1.41e-69 231 47 0 230 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P78022 5.61e-69 235 49 3 246 3 sigA RNA polymerase sigma factor SigA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q59996 8.85e-69 232 46 2 247 3 sigC Probable RNA polymerase sigma-C factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q31ME3 1.1e-68 229 43 2 246 1 sigA2 RNA polymerase sigma factor SigA2 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q60012 1.66e-68 229 46 0 230 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces viridifaciens
Q59914 7.02e-68 227 46 0 230 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces griseus
Q31QG5 2e-63 215 42 4 255 3 sigA3 RNA polymerase sigma factor SigA3 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q31QR8 2.79e-63 214 46 1 229 3 sigA4 RNA polymerase sigma factor SigA4 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P18184 7.91e-63 214 41 1 262 3 hrdC RNA polymerase principal sigma factor HrdC Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O51804 4.4e-62 212 42 1 256 3 rpoS RNA polymerase sigma factor RpoS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P47765 2.47e-61 209 41 1 256 3 rpoS RNA polymerase sigma factor RpoS Yersinia enterocolitica
P13445 6.9e-61 208 41 2 266 1 rpoS RNA polymerase sigma factor RpoS Escherichia coli (strain K12)
P35540 7.19e-61 208 41 2 266 3 rpoS RNA polymerase sigma factor RpoS Shigella flexneri
P0DM81 7.82e-61 208 41 2 266 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F5ZTT9 7.82e-61 208 41 2 266 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain ATCC 68169 / UK-1)
P0A2E6 7.82e-61 208 41 2 266 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhi
D0ZVL4 7.82e-61 208 41 2 266 1 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain 14028s / SGSC 2262)
P0A2E7 7.82e-61 208 41 2 266 3 rpoS RNA polymerase sigma factor RpoS Salmonella dublin
Q9KI19 1.02e-60 209 44 1 240 1 rpoS RNA polymerase sigma factor RpoS Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q03065 2.9e-60 207 44 1 225 3 sigB RNA polymerase sigma-B factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P45684 3.26e-58 201 40 1 256 1 rpoS RNA polymerase sigma factor RpoS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9LD95 6.98e-55 198 38 0 242 1 SIGF RNA polymerase sigma factor sigF, chloroplastic Arabidopsis thaliana
O22056 4.28e-50 186 39 0 237 2 SIGB RNA polymerase sigma factor sigB Arabidopsis thaliana
Q9ZSL6 1.49e-44 167 33 2 278 2 SIGD RNA polymerase sigma factor sigD, chloroplastic Arabidopsis thaliana
O24621 8.58e-37 148 33 1 240 2 SIGC RNA polymerase sigma factor sigC Arabidopsis thaliana
O24629 8.51e-36 144 33 6 236 1 SIGA RNA polymerase sigma factor sigA Arabidopsis thaliana
Q0J7T6 5.59e-34 139 32 5 245 2 SIGA RNA polymerase sigma factor sigA Oryza sativa subsp. japonica
Q9ZNX9 7.24e-34 139 33 5 256 1 SIGE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial Arabidopsis thaliana
Q07083 4.9e-26 112 31 7 257 3 sigC RNA polymerase sigma-C factor Myxococcus xanthus
P19433 4.69e-22 99 30 8 233 3 sigB RNA polymerase sigma-B factor Myxococcus xanthus
Q01624 7.7e-22 99 29 9 255 3 sigB RNA polymerase sigma-B factor Stigmatella aurantiaca (strain DW4/3-1)
B8H3C3 1.31e-21 99 32 7 240 3 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAW9 1.31e-21 99 32 7 240 1 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P19940 3.45e-21 97 30 5 226 1 sigG RNA polymerase sigma-G factor Bacillus subtilis (strain 168)
P50507 4.63e-20 94 30 9 251 3 rpoH RNA polymerase sigma factor RpoH Rhizobium radiobacter
P26764 1.04e-19 92 29 6 252 3 sigF RNA polymerase sigma-F factor Bacillus licheniformis
D5AQI9 1.63e-19 96 35 1 159 3 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P33658 2.07e-19 91 28 6 227 3 sigG RNA polymerase sigma-G factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P35145 2.78e-19 91 30 7 252 3 sigF RNA polymerase sigma-F factor Priestia megaterium
P07860 2.78e-19 91 28 6 245 1 sigF RNA polymerase sigma-F factor Bacillus subtilis (strain 168)
P50511 1.11e-18 90 29 8 244 3 rpoH RNA polymerase sigma factor RpoH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44404 1.11e-17 87 29 9 256 3 rpoH RNA polymerase sigma factor RpoH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42378 1.56e-17 86 29 4 238 3 rpoH RNA polymerase sigma factor RpoH Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0AGB3 2.27e-17 86 28 7 242 1 rpoH RNA polymerase sigma factor RpoH Escherichia coli (strain K12)
P0AGB4 2.27e-17 86 28 7 242 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB5 2.27e-17 86 28 7 242 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O157:H7
P50510 2.75e-17 86 30 8 237 3 rpoH RNA polymerase sigma factor RpoH Serratia marcescens
P11539 3.76e-17 85 28 9 242 3 rpoH RNA polymerase sigma factor RpoH Citrobacter freundii
P50509 5.74e-17 85 27 9 261 3 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis
P37971 1.94e-16 83 25 5 242 3 sigF RNA polymerase sigma-F factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q89B27 2.01e-16 83 25 4 248 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P50512 2.37e-16 83 29 7 247 3 rpoH RNA polymerase sigma factor RpoH Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P50508 6.17e-16 82 26 6 241 3 rpoH RNA polymerase sigma factor RpoH Enterobacter cloacae
P37970 1.23e-15 81 24 3 238 3 sigF RNA polymerase sigma-F factor Kitasatospora aureofaciens
Q8DD54 1.32e-15 81 28 9 264 3 rpoH RNA polymerase sigma factor RpoH Vibrio vulnificus (strain CMCP6)
P12254 1.73e-14 77 27 6 241 1 sigK RNA polymerase sigma-K factor Bacillus subtilis (strain 168)
O05385 2.03e-14 77 25 9 281 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA76 1.39e-13 75 26 8 239 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P26768 9.19e-13 68 41 1 91 3 None Putative RNA polymerase sigma-G factor (Fragment) Bacillus thuringiensis subsp. kurstaki
P9WGI3 2.12e-12 71 26 5 239 1 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI2 2.12e-12 71 26 5 239 3 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P62181 4.83e-12 69 26 5 239 1 sigK RNA polymerase sigma-28 factor Bacillus thuringiensis subsp. kurstaki
P62180 4.83e-12 69 26 5 239 3 sigK RNA polymerase sigma-28 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62182 4.83e-12 69 26 5 239 3 sigK RNA polymerase sigma-28 factor Bacillus anthracis
P0A2E8 1.44e-11 68 29 5 202 1 fliA RNA polymerase sigma factor FliA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E9 1.44e-11 68 29 5 202 3 fliA RNA polymerase sigma factor FliA Salmonella typhi
P0AEM6 4.23e-10 63 28 5 202 1 fliA RNA polymerase sigma factor FliA Escherichia coli (strain K12)
P0AEM7 4.23e-10 63 28 5 202 3 fliA RNA polymerase sigma factor FliA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM8 4.23e-10 63 28 5 202 3 fliA RNA polymerase sigma factor FliA Escherichia coli O157:H7
P17211 5.02e-08 58 26 5 208 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P06222 5.21e-08 57 44 0 65 1 sigE RNA polymerase sigma-E factor Bacillus subtilis (strain 168)
P62179 5.31e-08 57 44 0 65 1 sigE RNA polymerase sigma-35 factor Bacillus thuringiensis subsp. kurstaki
P62178 5.31e-08 57 44 0 65 3 sigE RNA polymerase sigma-35 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62177 5.31e-08 57 44 0 65 3 sigE RNA polymerase sigma-35 factor Bacillus anthracis
P33657 4.73e-07 54 44 0 61 3 sigE RNA polymerase sigma-E factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q9K5J6 6.05e-07 54 25 0 124 3 sigB RNA polymerase sigma-B factor Bacillus anthracis
P52621 7.04e-07 54 24 4 208 3 fliA RNA polymerase sigma factor FliA Yersinia enterocolitica
P06574 7.67e-07 54 24 7 239 1 sigB RNA polymerase sigma-B factor Bacillus subtilis (strain 168)
P29248 1.88e-06 53 23 7 248 3 fliA RNA polymerase sigma factor FliA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P10726 2.03e-06 53 26 5 204 1 sigD RNA polymerase sigma-D factor Bacillus subtilis (strain 168)
Q03474 5.58e-05 48 24 5 201 2 lafS RNA polymerase sigma factor for flagellar operon Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11730
Feature type CDS
Gene rpoD
Product RNA polymerase sigma factor RpoD
Location 2591863 - 2593719 (strand: 1)
Length 1857 (nucleotides) / 618 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2282
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00140 Sigma-70 factor, region 1.2
PF03979 Sigma-70 factor, region 1.1
PF04539 Sigma-70 region 3
PF04542 Sigma-70 region 2
PF04545 Sigma-70, region 4
PF04546 Sigma-70, non-essential region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0568 Transcription (K) K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03086 RNA polymerase primary sigma factor Flagellar assembly -

Protein Sequence

MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENSNDTDDDAVEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITAFIDPNAEEVAESDDVNLGKDDDEIDNSADDEDEDEDEDSDTDSDSDDDNSIDPELARQKFTELREQYEKTRQSIKAKGRNHKDTELEILQLSEIFKQFRLVPKQFDYLVNNMREMMDRVRAQERHIMRLCVDQVKMPKKNFITLFTGNETNDTWFTAARAMNKPWSEKLAGIEEEVQRSLQKLQQIEVETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHEVLGGLTLREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE

Flanking regions ( +/- flanking 50bp)

ATCGCCGACCGACACCAACCCAAATTACTTTGAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAGCTACTTGTTACGAAAGGTAAGGAGCAAGGCTACCTGACCTATGCTGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAAATCGAAGACATCATCCAGATGATTAACGACATGGGCATTCAGGTCATGGAAGAAGCACCTGATGCCGATGATCTGATGTTGGCAGAAAATTCAAATGACACTGATGATGATGCTGTCGAAGCCGCTGCTCAGGTACTTTCTAGTGTAGAATCTGAAATTGGCCGTACAACCGATCCTGTGCGTATGTATATGCGCGAAATGGGAACCGTTGAACTGCTCACCCGGGAAGGTGAAATTGATATCGCAAAACGTATTGAAGATGGTATTAACCAAGTTCAATGCTCAGTTGCTGAATATCCTGAAGCAATCACTTATCTTCTTGAACAATATGATCGTGTTGAAGCCGGTGAAGCGCGTCTTTCTGATTTAATTACTGCCTTTATTGACCCTAATGCCGAAGAAGTGGCAGAAAGTGATGATGTCAATTTAGGCAAAGACGACGATGAAATCGACAACAGCGCCGATGACGAAGATGAAGACGAAGATGAAGATAGCGACACAGACAGCGATAGCGATGATGATAACAGCATCGATCCTGAACTTGCTCGCCAAAAATTCACCGAGCTTCGTGAACAGTACGAAAAAACGCGTCAATCTATTAAGGCCAAAGGTCGTAATCATAAAGATACCGAACTGGAAATTTTACAGTTATCAGAAATTTTCAAACAGTTCCGCTTAGTGCCAAAACAGTTTGATTATCTGGTTAACAACATGCGTGAAATGATGGACAGAGTCCGTGCTCAAGAGCGTCACATCATGCGTCTTTGTGTTGATCAGGTCAAAATGCCTAAGAAAAACTTCATTACTCTGTTTACAGGAAATGAAACTAACGACACATGGTTTACTGCCGCTCGTGCGATGAATAAACCTTGGTCTGAAAAACTGGCAGGTATTGAAGAAGAAGTACAACGTAGCTTACAAAAGTTACAACAAATTGAAGTTGAAACAGGACTGACAATCGAACAGGTTAAAGATATTAACCGTCGTATGTCTATCGGTGAAGCAAAAGCACGCCGTGCGAAAAAAGAGATGGTCGAAGCGAACTTACGTTTAGTTATCTCTATCGCGAAAAAATATACCAACCGTGGCTTACAGTTCCTTGACCTGATCCAGGAAGGGAATATTGGTCTAATGAAAGCGGTTGATAAATTTGAATATCGTCGTGGTTATAAGTTCTCAACTTATGCAACATGGTGGATCCGTCAGGCTATTACTCGTTCAATCGCCGATCAGGCACGTACCATTCGTATTCCGGTACATATGATTGAAACGATTAATAAGCTAAACCGTATCTCGCGCCAAATGTTGCAAGAGATGGGACGTGAGCCTTCACCAGAAGAGCTTGCAGAACGTATGCTGATGCCTGAAGATAAAATCCGTAAGGTACTAAAAATCGCTAAAGAGCCTATCTCCATGGAAACCCCAATTGGTGACGATGAAGATTCACATTTAGGTGATTTTATCGAGGATACTACCCTCGAATTACCTCTGGATTCAGCAACATCAGAAAGCTTACGTTCAGCGACACACGAAGTATTAGGTGGTTTAACACTGCGTGAAGCTAAAGTCCTGCGTATGCGCTTTGGTATCGATATGAATACCGACCATACATTGGAAGAAGTGGGTAAACAATTTGATGTTACCCGTGAACGTATCCGTCAGATTGAAGCAAAAGCGTTGCGTAAATTACGCCACCCAAGCCGTTCTGAAGTGCTACGTAGCTTCCTTGATGAATAATCAATCTCTTTGATTTTGGTAGTAATACAAACGCCTGTGACTCACAGGCG