Homologs in group_1085

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06165 FBDBKF_06165 58.8 Morganella morganii S1 recC exodeoxyribonuclease V subunit gamma
EHELCC_09210 EHELCC_09210 58.8 Morganella morganii S2 recC exodeoxyribonuclease V subunit gamma
NLDBIP_09590 NLDBIP_09590 58.8 Morganella morganii S4 recC exodeoxyribonuclease V subunit gamma
LHKJJB_08165 LHKJJB_08165 58.8 Morganella morganii S3 recC exodeoxyribonuclease V subunit gamma
HKOGLL_07715 HKOGLL_07715 58.8 Morganella morganii S5 recC exodeoxyribonuclease V subunit gamma
F4V73_RS15750 F4V73_RS15750 60.0 Morganella psychrotolerans recC exodeoxyribonuclease V subunit gamma

Distribution of the homologs in the orthogroup group_1085

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1085

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P07648 0.0 1275 56 5 1126 1 recC RecBCD enzyme subunit RecC Escherichia coli (strain K12)
P44945 0.0 671 38 21 1076 3 recC RecBCD enzyme subunit RecC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57528 5.28e-167 525 28 13 1103 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AB4 4.92e-112 378 24 17 1131 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9B0 1.56e-101 348 26 17 810 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q8K9B0 1.14e-29 131 31 6 248 3 recC RecBCD enzyme subunit RecC Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A0QS30 9.13e-95 330 28 28 1081 3 recC RecBCD enzyme subunit RecC Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WIQ5 4.32e-89 314 28 22 930 1 recC RecBCD enzyme subunit RecC Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIQ4 2.39e-88 312 28 22 930 3 recC RecBCD enzyme subunit RecC Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8XPE3 9.08e-05 50 20 15 466 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Clostridium perfringens (strain 13 / Type A)
Q8RCZ1 0.000188 49 19 15 420 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q18AP0 0.000294 48 21 18 427 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Clostridioides difficile (strain 630)
Q0TV47 0.000498 48 20 15 466 3 addB ATP-dependent helicase/deoxyribonuclease subunit B Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11430
Feature type CDS
Gene recC
Product exodeoxyribonuclease V subunit gamma
Location 2518264 - 2521641 (strand: -1)
Length 3378 (nucleotides) / 1125 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1085
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04257 Exodeoxyribonuclease V, gamma subunit
PF17946 RecC C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1330 Replication, recombination and repair (L) L Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] Homologous recombination -

Protein Sequence

MFHIYHSNQLSLLKSLMVHFMQNRPLSSPFEQEVILVQSPGMSQWLQIQLAESLGIAANIRYPLPATFIWEMFTRVLSGIPKESAFSKDAMTWKLMALLPNYLDDPAFKPLRHYLKDDEDKRKLHQLAGRVADLFDQYLVYRPDWLSAWENDQLIDGLSDNQYWQKTLWLALQRYTEDLAQPKWHRANLYQQFISTLNDAPVGALAHCFPSRIFICGISALPQVYLQALQAIGRHTEIYLLFTNPCRYYWGDIQDPKFLARLNSRKPRHYQQLHELPWFKDEQNASTLFNEEGEQNVGNPLLASWGKLGKDNLYFLSELEYSDVLDAFVDIPRDNLLHQLQADILDLEDFSQIGQTLEDYQSSEKKRIIANDDRSLTFHASHSPQREVEVLQDQLLHLLEQDADLLPRDIIVMVADIDSYTPYIQAVFGNAPAERYIPFAISDRKARQVHPVLQAFITLLELPQSRFTAEQVLALLEVPALAAHFAIFENELKLLRRWVEESGIRWGLDDENVASFLLPVTGKNTWEFGLLRMLLGYAMDSEAGPWQGVLPYDESSGLVAELAGHLADFLYTLSEWRTRLSETRNLEEWLDIGQQLVDAFFDTDEETELVLALITQQWQKVIKNGLEAHYQHEIPLVLIRDELTVRFDDEKISQRFLAGSLNFCTLMPMRSIPFKAVCLLGMNDGIYPRNIQPLGFDLMAEKRRRGDRKRRDDDRYLFLEALSSAEKYLYISYIGKSIRDDRECNPSVLIKELQDYIGQNFRLREDASLNVDDSAQRIISHLLTQHSRVPFAPENFKTDALYRSYAAEWLPAASGKGTAHQAFSTPLNKKIEKVSLDELSRFYRHPVRAFFQQSLKTNFVIEETELPEEEPFVINALQRYLLNQWLLKALIEGTSTEALYERIKAAGKLPASAFGQIYWEQQIETLQPLAEKVRSERLATHSVTIEYQFNTIPLIGRLNEVQADGLLRWRPATLTANDLLQLWIEHLVYCLSGGTGESRFYGRKESQWCLSPVSADIAYSTLERLIQDYQTGMNTPLALFANSGWAWLQACFDKKTQTFLFDDEEIQNKAELVLTQYLTDSYNREGEMNDIYIQRVFHQLDAPFLEAVKQTTLAIFKPIIPFIKK

Flanking regions ( +/- flanking 50bp)

ATGTGACACGCTTATACCATTGGTCATGTGATTAATAAAATGAGGATCTGATGTTCCATATTTACCATTCAAATCAATTATCACTACTTAAATCACTGATGGTACATTTTATGCAAAATCGGCCACTATCATCGCCTTTTGAGCAAGAAGTGATTTTAGTGCAAAGTCCCGGAATGTCGCAGTGGTTACAAATCCAATTAGCAGAAAGTTTGGGTATTGCTGCTAATATCCGTTATCCATTACCCGCTACTTTTATTTGGGAAATGTTTACTCGGGTATTATCAGGTATACCTAAAGAAAGTGCGTTTTCTAAAGATGCCATGACATGGAAACTAATGGCATTATTGCCTAATTACCTTGATGATCCGGCATTTAAACCCTTGCGACATTATCTTAAAGATGATGAAGACAAACGTAAATTACATCAACTAGCGGGGCGTGTGGCGGATCTCTTTGACCAATATCTGGTTTATCGTCCTGATTGGTTGTCGGCATGGGAAAATGATCAACTAATTGATGGCTTGAGTGACAATCAATATTGGCAAAAAACACTGTGGTTGGCACTGCAACGCTATACAGAAGATCTTGCGCAACCTAAATGGCATCGTGCTAATCTTTATCAACAATTTATTTCTACTTTGAATGATGCGCCAGTAGGGGCGCTTGCGCACTGTTTTCCATCGCGTATTTTTATTTGTGGTATTTCAGCATTGCCACAAGTCTATTTGCAAGCACTGCAAGCAATCGGCAGACATACCGAAATCTATTTATTGTTTACTAATCCTTGCCGCTATTACTGGGGAGATATTCAAGATCCAAAATTCCTCGCTCGTCTAAATAGTAGAAAGCCTCGACATTATCAGCAACTTCATGAACTACCTTGGTTTAAAGATGAACAAAATGCATCGACACTATTTAATGAAGAAGGGGAGCAAAATGTCGGCAATCCACTATTAGCGTCTTGGGGAAAGTTAGGTAAAGATAATCTCTATTTTCTTTCTGAGCTTGAATATAGCGATGTGTTAGATGCTTTTGTTGATATACCAAGAGATAATTTATTACATCAACTTCAGGCCGATATACTCGATTTAGAGGATTTTTCACAAATAGGTCAGACGCTTGAGGATTACCAAAGTAGTGAAAAAAAACGGATCATCGCCAATGATGATCGCTCTTTGACCTTTCATGCTAGCCATAGCCCACAACGGGAAGTCGAGGTATTACAAGACCAATTACTGCATCTCCTCGAGCAAGATGCTGATTTATTACCGCGAGATATTATTGTTATGGTGGCGGATATTGATAGCTATACGCCCTATATTCAAGCCGTATTTGGTAATGCGCCCGCAGAGCGTTATATTCCTTTTGCCATTTCAGACCGAAAAGCTCGCCAAGTACATCCTGTCTTACAAGCTTTTATCACTTTATTAGAATTACCTCAAAGCCGTTTTACCGCAGAGCAAGTGCTTGCATTACTTGAAGTACCCGCCTTAGCTGCACATTTTGCCATTTTTGAAAATGAGTTGAAGCTACTACGGCGCTGGGTTGAAGAGTCAGGTATACGTTGGGGATTAGATGATGAAAATGTGGCCTCCTTTTTATTACCTGTGACAGGAAAAAATACGTGGGAGTTTGGGTTATTAAGGATGCTTCTTGGTTATGCGATGGACAGTGAGGCAGGGCCGTGGCAAGGGGTATTGCCTTACGATGAATCAAGTGGCCTAGTCGCTGAGTTAGCAGGGCATCTAGCAGATTTTCTATATACCTTAAGTGAATGGCGCACACGATTAAGCGAAACTCGCAACTTAGAAGAGTGGCTTGATATCGGTCAACAGCTTGTTGATGCTTTTTTTGACACTGATGAAGAGACAGAGCTGGTATTGGCGCTTATCACACAACAGTGGCAAAAGGTGATAAAAAATGGTCTAGAGGCGCACTATCAACATGAAATTCCATTAGTGCTGATCCGCGATGAACTTACAGTGCGTTTTGATGATGAGAAAATTAGCCAACGCTTTTTAGCCGGAAGCCTTAATTTTTGCACCTTAATGCCAATGCGTTCAATTCCATTTAAAGCAGTCTGTTTATTGGGAATGAATGATGGGATCTACCCACGTAATATTCAGCCATTAGGATTTGATTTAATGGCAGAAAAACGTCGTCGAGGTGATAGAAAACGTCGTGATGATGATCGCTACCTGTTTTTAGAAGCATTAAGCTCAGCAGAAAAATACCTTTATATCAGTTATATTGGTAAATCTATTCGTGACGATCGTGAATGTAATCCTTCGGTATTGATTAAAGAGTTACAAGATTATATTGGGCAAAATTTCCGTTTAAGGGAAGATGCATCATTAAATGTTGATGACAGTGCGCAGCGTATCATCAGCCACTTATTAACCCAACATAGTCGAGTGCCTTTTGCGCCAGAAAACTTTAAAACGGATGCCCTATATCGCTCTTATGCCGCTGAATGGTTACCGGCAGCAAGTGGGAAAGGAACTGCTCACCAAGCATTTTCAACGCCATTAAATAAAAAAATTGAGAAAGTCTCTTTAGATGAACTATCACGCTTTTATCGCCATCCCGTACGTGCTTTTTTCCAGCAAAGTCTAAAAACGAATTTTGTTATTGAAGAGACCGAGCTACCGGAAGAAGAGCCTTTTGTCATTAATGCATTACAACGTTATCTATTAAACCAATGGTTATTAAAAGCCTTAATCGAAGGGACATCAACAGAAGCACTTTATGAACGCATTAAAGCTGCTGGAAAATTACCAGCTAGTGCGTTTGGTCAAATTTATTGGGAGCAACAAATAGAAACGTTGCAACCTTTAGCCGAAAAAGTCAGAAGTGAACGTTTAGCAACCCATTCTGTCACAATAGAATACCAATTTAATACGATCCCATTAATTGGTCGTTTAAATGAAGTACAAGCCGATGGGTTACTCCGTTGGCGACCCGCCACATTAACAGCTAATGATCTACTGCAATTATGGATAGAACATCTCGTGTACTGCTTAAGTGGTGGAACTGGCGAAAGCCGTTTTTATGGTAGAAAAGAGTCGCAATGGTGTCTATCACCGGTGTCTGCGGATATAGCGTATTCAACCCTTGAAAGATTGATCCAAGATTATCAAACAGGTATGAATACACCTTTAGCCTTATTCGCCAACAGTGGTTGGGCTTGGTTACAAGCTTGCTTCGATAAAAAAACACAGACGTTTTTATTTGATGATGAAGAGATACAAAACAAGGCAGAATTGGTATTAACGCAATATTTAACCGATAGCTATAACCGAGAAGGTGAAATGAATGATATCTATATTCAACGTGTATTTCATCAGCTTGATGCACCTTTTCTTGAGGCAGTAAAACAGACCACGTTAGCCATATTTAAGCCAATCATTCCATTTATAAAAAAATAAGGGAGCTCATATCAGATGAGAAAATACTTATCGCAACTTTGGATTATGTT