COG1330


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1330, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V)
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG1330 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1085 FBDBKF_06165 60067 63468 -1 recC exodeoxyribonuclease V subunit gamma Morganella morganii S1
1 group_1085 EHELCC_09210 60639 64040 -1 recC exodeoxyribonuclease V subunit gamma Morganella morganii S2
2 group_1085 NLDBIP_09590 60639 64040 -1 recC exodeoxyribonuclease V subunit gamma Morganella morganii S4
3 group_1085 LHKJJB_08165 153198 156599 1 recC exodeoxyribonuclease V subunit gamma Morganella morganii S3
4 group_1085 HKOGLL_07715 153198 156599 1 recC exodeoxyribonuclease V subunit gamma Morganella morganii S5
5 group_1085 F4V73_RS15750 150684 154085 1 recC exodeoxyribonuclease V subunit gamma Morganella psychrotolerans
6 group_1085 PMI_RS11430 2518264 2521641 -1 recC exodeoxyribonuclease V subunit gamma Proteus mirabilis HI4320