Homologs in group_1082

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06150 FBDBKF_06150 58.9 Morganella morganii S1 recD exodeoxyribonuclease V subunit alpha
EHELCC_09195 EHELCC_09195 58.9 Morganella morganii S2 recD exodeoxyribonuclease V subunit alpha
NLDBIP_09575 NLDBIP_09575 58.9 Morganella morganii S4 recD exodeoxyribonuclease V subunit alpha
LHKJJB_08180 LHKJJB_08180 58.9 Morganella morganii S3 recD exodeoxyribonuclease V subunit alpha
HKOGLL_07730 HKOGLL_07730 58.9 Morganella morganii S5 recD exodeoxyribonuclease V subunit alpha
F4V73_RS15765 F4V73_RS15765 60.0 Morganella psychrotolerans recD exodeoxyribonuclease V subunit alpha

Distribution of the homologs in the orthogroup group_1082

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1082

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04993 0.0 610 51 9 631 1 recD RecBCD enzyme subunit RecD Escherichia coli (strain K12)
Q89AB2 6.21e-109 344 31 13 636 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57530 1.93e-105 334 33 8 615 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P45158 3e-100 322 34 16 669 3 recD RecBCD enzyme subunit RecD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9A8 8.33e-90 293 30 11 628 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P9WHJ1 1.69e-67 234 35 18 551 1 recD RecBCD enzyme subunit RecD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHJ0 1.69e-67 234 35 18 551 3 recD RecBCD enzyme subunit RecD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A0QS28 1.82e-61 217 33 14 539 3 recD RecBCD enzyme subunit RecD Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O34481 6.06e-16 85 39 5 139 1 recD2 ATP-dependent RecD2 DNA helicase Bacillus subtilis (strain 168)
O34481 6.59e-09 62 30 3 164 1 recD2 ATP-dependent RecD2 DNA helicase Bacillus subtilis (strain 168)
Q9RT63 8.41e-16 84 38 4 142 1 recD2 ATP-dependent RecD2 DNA helicase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9RT63 3.46e-12 73 29 3 171 1 recD2 ATP-dependent RecD2 DNA helicase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q58914 3.25e-10 67 29 6 181 4 MJ1519 Uncharacterized protein MJ1519 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58914 3.7e-09 63 41 2 80 4 MJ1519 Uncharacterized protein MJ1519 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P32270 1.84e-07 57 29 5 167 1 dda ATP-dependent DNA helicase dda Enterobacteria phage T4

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11415
Feature type CDS
Gene recD
Product exodeoxyribonuclease V subunit alpha
Location 2509816 - 2511732 (strand: -1)
Length 1917 (nucleotides) / 638 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1082
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13245 AAA domain
PF13538 UvrD-like helicase C-terminal domain
PF21185 RecBCD enzyme subunit RecD, N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0507 Replication, recombination and repair (L) L ATPase/5’-3’ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] Homologous recombination -

Protein Sequence

MIKLLEQAIAQNLLRPLDLRFAQMLVADENPILLFIFAYLSAQTGAGHVCLPLNIIQQDKLFDGRHTELSQAIWQEMAQPSAKEILAELNQSECVNQGHSDLPSPIILDNGLLYLQRMWRYEEQIAQFFRQEQRVVDIDENQLTNVLNQLFPSVKTHAETNWQKVAAAVAITSSISIISGGPGTGKTTTVAKILAAFVMLTANEKPIIQLAAPTGKAAARLTESLGKALAQLALSEEELKWMPDQAQTIHRLLGAQPESQQVRYHRDNPLQLDILVIDEASMVDLPMMARLIEALPEHCHVIFLGDKDQLASVEAGAVLGDICRFADQGFSQRRFEQIDRLTQGELQKDPASMTTSTTPVSVVSDSLCLLRKSYRFGSHSGIGQLAFAVNQGQVKSAMTLLKKATVTQESTEREKHTDPQDIEFISLDTDESYMKMLQDVAKAYHHYLSLVAQKAAPETILHSFNQYRLLCALREGPFGVTGLNERIEMLLHRQRLIRRPINSYQREYIGRPIMIQRNDSTLGLFNGDIGIMLNNDEGEMKAFFQLPDGTLKAIQPSRLPQHETAYVMTVHKSQGSEFTHTALVLPTQFSPIVSRELLYTAITRAKQKLSLYSSEYMVKMAIQTRIQRRSGLVEKLRY

Flanking regions ( +/- flanking 50bp)

GCTTGAGGTTAACGGCAGTAAAGTGAACGTGCTGGGTGAGAACAATTCAAATGATTAAATTATTAGAACAAGCAATTGCACAAAACCTATTGCGCCCGTTAGATTTACGTTTTGCTCAAATGCTGGTGGCAGATGAAAATCCTATCCTACTGTTTATTTTTGCCTATCTCAGTGCTCAAACAGGGGCGGGCCATGTTTGCTTACCGTTAAATATCATACAACAAGATAAATTGTTTGATGGGCGACACACCGAGCTTTCACAAGCCATTTGGCAGGAAATGGCGCAACCATCAGCGAAAGAAATACTGGCAGAGCTTAATCAGAGCGAGTGTGTTAATCAAGGCCATAGTGACTTACCTTCACCTATTATTCTCGATAACGGATTACTTTATCTACAAAGAATGTGGCGTTATGAAGAGCAAATTGCGCAATTTTTTCGCCAAGAGCAACGGGTGGTTGATATCGATGAAAATCAATTAACAAACGTATTAAATCAACTTTTCCCAAGCGTTAAAACACATGCTGAAACTAACTGGCAAAAAGTCGCCGCAGCGGTTGCTATTACAAGCTCTATTTCGATTATTTCGGGTGGCCCAGGAACAGGGAAAACCACGACAGTAGCAAAGATTTTAGCTGCTTTTGTCATGCTAACGGCGAATGAAAAACCCATTATTCAACTAGCCGCACCCACGGGAAAAGCGGCAGCTAGATTGACCGAATCATTAGGTAAAGCATTAGCGCAATTGGCACTAAGTGAAGAAGAGTTAAAATGGATGCCCGATCAAGCGCAAACCATTCATCGCTTATTAGGTGCCCAACCGGAAAGTCAGCAAGTTCGTTATCATCGCGATAATCCGCTACAACTTGATATCTTGGTTATAGATGAAGCTTCTATGGTGGATTTACCGATGATGGCGCGTTTAATTGAGGCCTTACCGGAACATTGCCATGTTATTTTTCTGGGAGATAAAGATCAGCTCGCTTCGGTAGAGGCAGGAGCCGTTTTAGGGGATATTTGTCGTTTTGCGGATCAGGGGTTTAGCCAACGCCGTTTTGAGCAGATTGATCGCTTAACACAAGGTGAATTACAGAAAGATCCCGCTTCTATGACGACTTCTACTACGCCAGTTTCGGTGGTCAGTGATTCACTATGTTTACTGCGTAAAAGTTATCGTTTTGGCTCACATTCAGGTATTGGTCAATTAGCTTTTGCGGTTAATCAAGGACAAGTGAAGAGTGCTATGACGTTACTGAAAAAAGCGACAGTAACACAAGAGAGCACTGAGCGAGAAAAACATACCGATCCGCAGGACATCGAATTTATCTCATTAGACACCGATGAGAGCTATATGAAGATGCTTCAAGATGTTGCTAAGGCTTATCATCACTATCTATCGTTAGTCGCGCAAAAAGCAGCACCAGAGACTATTCTTCATAGCTTTAATCAATATCGTTTATTGTGCGCTTTGCGAGAAGGGCCTTTTGGTGTCACAGGACTAAATGAACGTATTGAGATGCTGTTACATCGCCAACGCTTGATACGACGACCTATAAATAGTTATCAGCGGGAGTATATTGGACGACCAATTATGATCCAGCGTAATGACAGCACATTGGGGCTATTTAATGGTGATATCGGCATTATGCTTAATAACGATGAAGGAGAAATGAAAGCTTTCTTTCAGTTGCCTGATGGCACATTGAAAGCTATCCAACCTAGTCGTTTACCGCAACATGAGACTGCTTATGTGATGACAGTACATAAATCACAAGGTTCGGAATTTACCCATACGGCACTGGTGTTGCCAACACAATTTTCTCCTATTGTTAGCCGAGAATTACTCTATACGGCGATAACGCGAGCCAAGCAGAAGCTATCACTTTATTCTTCTGAATATATGGTGAAAATGGCGATCCAGACACGTATTCAACGCCGCAGTGGATTAGTTGAAAAACTGCGTTACTGAGTGATTTTTTAAGTTAATACGAATTAATATTATTATAGTAAATAGCAAAA