Homologs in group_1082

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06150 FBDBKF_06150 100.0 Morganella morganii S1 recD exodeoxyribonuclease V subunit alpha
NLDBIP_09575 NLDBIP_09575 100.0 Morganella morganii S4 recD exodeoxyribonuclease V subunit alpha
LHKJJB_08180 LHKJJB_08180 100.0 Morganella morganii S3 recD exodeoxyribonuclease V subunit alpha
HKOGLL_07730 HKOGLL_07730 100.0 Morganella morganii S5 recD exodeoxyribonuclease V subunit alpha
F4V73_RS15765 F4V73_RS15765 82.6 Morganella psychrotolerans recD exodeoxyribonuclease V subunit alpha
PMI_RS11415 PMI_RS11415 58.9 Proteus mirabilis HI4320 recD exodeoxyribonuclease V subunit alpha

Distribution of the homologs in the orthogroup group_1082

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1082

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04993 0.0 573 53 7 599 1 recD RecBCD enzyme subunit RecD Escherichia coli (strain K12)
Q89AB2 9.44e-119 369 32 11 615 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P45158 1.7e-101 324 39 13 535 3 recD RecBCD enzyme subunit RecD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57530 3.4e-95 307 30 6 596 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9A8 2.08e-90 294 28 10 605 3 recD RecBCD enzyme subunit RecD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A0QS28 1.2e-59 211 35 15 610 3 recD RecBCD enzyme subunit RecD Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WHJ1 9.23e-58 207 38 17 510 1 recD RecBCD enzyme subunit RecD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHJ0 9.23e-58 207 38 17 510 3 recD RecBCD enzyme subunit RecD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O34481 1.7e-28 124 29 14 427 1 recD2 ATP-dependent RecD2 DNA helicase Bacillus subtilis (strain 168)
Q58914 1.21e-19 97 23 15 475 4 MJ1519 Uncharacterized protein MJ1519 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9RT63 3.53e-17 89 42 4 142 1 recD2 ATP-dependent RecD2 DNA helicase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9RT63 3.97e-15 82 31 5 190 1 recD2 ATP-dependent RecD2 DNA helicase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q44363 3.63e-09 63 25 18 461 3 traA Conjugal transfer protein TraA Rhizobium radiobacter
P32270 1.23e-06 55 28 4 156 1 dda ATP-dependent DNA helicase dda Enterobacteria phage T4
Q44349 0.000883 46 27 4 143 3 traA Conjugal transfer protein TraA Agrobacterium fabrum (strain C58 / ATCC 33970)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_09195
Feature type CDS
Gene recD
Product exodeoxyribonuclease V subunit alpha
Location 52310 - 54142 (strand: -1)
Length 1833 (nucleotides) / 610 (amino acids)

Contig

Accession ZDB_218
Length 215957 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1082
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13245 AAA domain
PF13538 UvrD-like helicase C-terminal domain
PF21185 RecBCD enzyme subunit RecD, N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0507 Replication, recombination and repair (L) L ATPase/5’-3’ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03581 exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] Homologous recombination -

Protein Sequence

MNTHLQTLCAEQILRPLDCQFAAMLAPDSHPLLQFVFALLSAQTGGGHVCLPLSRIIPAAEQGGRHAEIMQSVWRALNEPGLPEIKAALSASDAVSDGSLPAPVVLSEENLYLHRMWQYECRVAEFFSRPQRISADAEKLRPVLDALFGTEEPEDWQKIAAAVAVSSRTSVISGGPGTGKTTTVARILAALVQSAAEPLLIELAAPTGKAAARLTESLGEAIAQLDLTDAQRAMMPEQAKTLHRLLGAQPDSRRLRHHQKNPLMSDVLIVDEASMVDLPMMASLIDALPENAILILLGDKDQLASVEAGAVLGDICRFAESGYTPQRRQALEAMTGCVLPDKSPAHPVNVQDHLCLLRKSFRFDAGSGIGQLATAVNNGDIRETMAVLGGQRPDVRYVPLEDEEGYAQVLTDTMKAYLPFLSLVKQHADPAAVLDAFSQFRLLCALREGPFGVEGLNERIERLLHQQGHIRRPLIHRHRAYNGKPVMISRNDSPLGLFNGDIGIMLTDENHELRVYFRLPDGTIRSIRPSRLPAHETAYVMTVHKSQGSEFAHTALVLPVQPSPLVSRELLYTALTRAKQFLTIYSREECVKRAVKTPTQRYSGLSGRLR

Flanking regions ( +/- flanking 50bp)

CAGGCATTCACGGAGCAACTGGATGCCCTGTTCAAAGGGGAGGAAGGTTAATGAATACTCACTTACAAACCTTATGTGCAGAGCAGATCCTGCGTCCCCTGGACTGTCAGTTTGCGGCGATGCTGGCACCGGATAGTCATCCGCTGCTGCAATTTGTGTTTGCGCTGCTCAGTGCACAAACCGGCGGCGGACATGTCTGCCTGCCGCTGTCGCGGATTATTCCCGCAGCGGAACAGGGCGGACGGCATGCGGAAATCATGCAGTCTGTCTGGCGGGCACTGAATGAGCCGGGACTGCCGGAGATAAAAGCGGCGCTGTCTGCCTCTGATGCGGTTAGTGATGGCTCACTTCCCGCCCCGGTTGTGCTGTCAGAAGAGAATTTGTACCTGCACCGGATGTGGCAGTATGAATGCCGGGTGGCTGAATTTTTCTCCCGGCCTCAGCGGATTTCTGCTGATGCAGAGAAACTGCGCCCGGTTCTGGATGCATTGTTCGGTACGGAAGAACCGGAGGACTGGCAGAAAATTGCCGCAGCGGTAGCGGTCAGCAGCCGGACTTCCGTTATTTCCGGCGGGCCCGGTACCGGTAAAACCACAACCGTTGCCCGTATTCTGGCGGCACTGGTGCAATCCGCCGCTGAGCCGCTGCTGATTGAACTGGCAGCACCGACCGGCAAAGCGGCAGCCCGCCTGACTGAATCACTGGGTGAGGCGATCGCGCAGCTTGATTTGACGGATGCACAGCGGGCCATGATGCCGGAGCAAGCCAAAACCCTGCACCGCCTGCTGGGCGCTCAGCCGGACAGCCGCCGGTTACGCCATCATCAGAAAAACCCGCTGATGTCGGATGTGCTGATTGTGGATGAAGCATCCATGGTCGATTTACCGATGATGGCGTCACTGATTGATGCACTGCCGGAGAACGCTATTCTGATCCTGCTGGGGGATAAAGATCAGCTGGCTTCGGTGGAAGCCGGGGCGGTGCTGGGGGATATCTGCCGTTTTGCTGAATCCGGTTACACACCACAGCGGCGGCAGGCGCTGGAGGCTATGACCGGCTGTGTGCTGCCGGATAAGTCGCCGGCGCATCCGGTCAATGTGCAGGATCACCTCTGCCTGCTGCGTAAAAGTTTCCGTTTTGATGCCGGTTCCGGCATCGGGCAACTGGCCACCGCAGTTAACAACGGCGATATCCGGGAAACCATGGCGGTTCTCGGCGGGCAGAGGCCGGATGTCCGTTATGTGCCGCTGGAGGATGAAGAAGGCTATGCTCAGGTACTGACAGACACCATGAAAGCCTATCTGCCGTTTTTATCACTGGTGAAACAGCATGCCGATCCTGCAGCGGTGCTTGATGCCTTCAGTCAGTTCCGGTTGTTGTGTGCGCTGCGTGAGGGACCGTTCGGTGTGGAAGGGCTGAATGAGCGTATTGAACGGCTGCTGCATCAGCAGGGGCATATCCGCCGTCCGCTGATACACCGGCACCGCGCCTATAACGGCAAACCGGTGATGATAAGCCGTAATGACAGCCCGCTGGGGCTGTTCAACGGTGATATCGGGATTATGCTGACGGATGAAAACCATGAGCTGCGGGTGTATTTCCGGCTGCCGGACGGCACTATCCGGAGTATCCGCCCGAGTCGTCTTCCGGCACACGAAACGGCGTATGTGATGACAGTGCATAAATCACAGGGCTCTGAGTTTGCTCATACCGCGCTGGTGCTGCCGGTGCAGCCTTCGCCGCTGGTCAGCCGTGAATTGCTGTATACGGCACTGACGCGGGCGAAGCAGTTTCTGACCATATACAGCCGGGAAGAGTGTGTTAAGCGGGCAGTGAAAACGCCGACTCAGCGGTACAGCGGGCTGAGCGGGCGTTTACGTTAGTCCGGCGGATTACTGAAAACCGAGGATCAGGATTTTTGAGCGCCGCTGAT