Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 29.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 27.1 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 28.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 26.9 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 39.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 33.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 40.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 23.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 37.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 39.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 0.0 613 40 16 824 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 0.0 600 40 19 859 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 0.0 598 39 14 843 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 0.0 590 39 14 843 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P37924 0.0 587 39 18 851 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46009 0.0 558 37 18 848 3 focD Outer membrane usher protein FocD Escherichia coli
P77468 0.0 557 37 21 861 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P53517 3.5e-179 540 34 14 860 3 afaC Outer membrane usher protein AfaC Escherichia coli
P42915 1.91e-178 538 37 19 848 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
Q56983 8.6e-165 502 35 15 829 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 8.6e-165 502 35 15 829 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33408 3.41e-163 498 34 15 815 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P46005 2.08e-154 476 33 11 852 3 aggC Outer membrane usher protein AggC Escherichia coli
P26949 1.32e-152 471 34 13 818 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33388 1.76e-131 415 35 21 804 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
Q8X5K8 6.09e-116 363 39 9 502 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P15484 2.96e-105 349 30 12 745 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33129 1.62e-99 332 30 25 855 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P53512 5.81e-98 327 31 19 784 3 cssD Outer membrane usher protein CssD Escherichia coli
P33397 6.24e-98 327 32 26 818 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 3.12e-96 322 31 26 818 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 3.44e-95 319 31 26 819 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P46000 8.16e-95 318 30 23 824 3 fasD Outer membrane usher protein FasD Escherichia coli
P53513 1.61e-94 317 31 18 786 3 cssD Outer membrane usher protein CssD Escherichia coli
P21647 3.87e-93 314 29 17 800 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33341 6.78e-89 302 29 18 781 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P77196 2.89e-84 291 27 23 860 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
Q8X5K7 8.28e-81 267 44 9 340 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P33410 2.74e-79 277 28 21 819 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P07110 2.76e-74 262 27 22 840 1 papC Outer membrane usher protein PapC Escherichia coli
P75750 3.02e-74 262 28 24 812 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P53514 2.11e-71 254 26 25 836 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 2.05e-67 243 26 22 810 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P37868 3.45e-63 231 28 21 717 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7DBJ9 7.39e-61 214 36 9 366 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 6.43e-58 206 36 9 366 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P12050 5.96e-52 198 27 24 749 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 4.01e-48 187 25 25 817 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 5.89e-32 137 24 30 771 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10900
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 2399764 - 2402271 (strand: -1)
Length 2508 (nucleotides) / 835 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKISKVCISLILYLGYAALLYAENNNLDDIYFDPDFLELPNKDIIDLSSFENNQQLAGDYYVDIYVNTNLILTKNIRFDKDKNNQLKPCLSVNDLNDFGVKTTDYPGLYSEYTSCVNLSAIPEAKSELDFDSQRLYLSIPQIALSKNPRGYIELDNIDNGINALLLNYSYSGSKNYDRKNGSSNTTSNYINLRPGLNLGPWRLRNYTTWSSTSNQSGKWNTLYTYLSRNINKIKSQLILGDGISSSDVFDSVPFRGMQLSTDDEMYPESLRGYAPIIRGIAKSNSQITIKQNGYTIYQTEVAAGPFEINDLYPSGSSGDLYVTIKGANGSEQHQIVPFASLPVLQREGHFTYSVTGGEYRAYDNNVDKTKFGQFTLVYGLPYGTTAYGGSQLSQNYQSYSLGVGKNLGSFGAVSVDVTQAKSTFNDGRKQQGQSYRFRYNKNLNNIGTNIALAGYRYSTSGFYSLSEVFDSFRRTHYSPEIEQRRHRAEITLNQNLGDKYGSLAIGYIQEDYWNSKSKKQSATLGYNNSWQGISYGINYTYNKNTVNHSYIADQKRQNDDEHLLAFSVNVPFSVFDNTFYYNFNANSNNNSSSTGSVGISASQLNNRLNWSVQQAFTNQDQGSSGNINASYKGQLGDITGGYSYSKDNHNLYYGVSGSVVAHSQGVVFGQQLGETAAIVDIPNAGDITILNQAGVRTNNSGYALVPYVTPYRKNTVEIDTLRLPENAEMELTSQTVLPSRGALVKANFSANVGYRVLMTINLENKKPVPFGAQAIFKDNSQLNSIVGNDGEVYLSGLKQKGNFTIKYNNESCQVNYDLSDIPDYLGLYKTTVTCY

Flanking regions ( +/- flanking 50bp)

GGCTAATGTGGATTTATCCGAAGTTAGAATATAATAATTAGGTTTCTAATATGAAAATAAGTAAGGTATGTATTAGCCTCATTTTATACTTAGGCTATGCAGCTTTATTATATGCAGAAAATAATAATTTAGATGATATCTATTTTGATCCAGATTTTTTAGAGCTGCCAAATAAAGATATTATTGATTTATCTTCTTTTGAGAATAACCAACAGCTAGCAGGTGACTATTATGTTGATATTTATGTTAACACTAATTTAATTTTAACTAAAAATATTAGATTTGATAAAGATAAAAATAATCAGCTTAAACCTTGTTTATCAGTAAATGATCTAAATGACTTTGGGGTTAAAACAACAGATTATCCTGGGCTTTATTCTGAATATACTAGCTGTGTCAATTTGTCTGCGATACCAGAAGCTAAAAGTGAATTAGATTTTGATTCACAAAGGTTATATTTAAGTATTCCGCAAATTGCATTATCTAAAAACCCAAGAGGATATATAGAGTTAGATAATATTGATAATGGTATAAATGCCTTATTACTAAACTATAGTTATAGTGGTTCTAAAAACTATGATCGTAAGAATGGCAGTTCAAATACAACTTCAAATTATATAAATTTAAGACCAGGTTTAAATTTAGGACCATGGCGTTTAAGAAACTACACAACATGGTCGAGTACAAGTAATCAATCAGGGAAGTGGAACACCCTTTATACCTATTTATCTAGGAATATAAATAAAATAAAAAGTCAGTTAATACTAGGGGATGGGATATCTTCATCTGATGTTTTTGATAGTGTTCCGTTTCGAGGCATGCAATTATCAACAGATGATGAGATGTATCCAGAAAGTTTAAGAGGCTATGCGCCTATCATTAGAGGGATTGCAAAAAGTAACTCGCAAATAACTATCAAACAAAATGGATATACTATTTATCAAACTGAAGTGGCAGCTGGCCCTTTTGAAATTAATGATTTATATCCATCAGGTAGTAGTGGGGATTTATACGTTACGATTAAGGGTGCTAATGGTAGTGAGCAACATCAAATCGTACCTTTCGCCTCTTTACCTGTATTACAGCGTGAAGGTCATTTCACTTATAGCGTAACGGGCGGTGAATATCGTGCTTATGATAATAATGTAGATAAAACGAAGTTTGGTCAGTTTACATTAGTTTATGGTTTACCTTATGGCACTACTGCTTATGGGGGAAGTCAGTTGAGTCAAAATTATCAATCTTACTCCCTAGGTGTTGGGAAGAATTTAGGCTCATTTGGTGCTGTTTCTGTTGATGTTACACAGGCTAAGTCAACTTTTAATGATGGAAGGAAGCAACAAGGTCAGTCTTATCGGTTTAGATATAATAAGAATTTGAACAATATAGGAACCAATATTGCTTTAGCAGGTTATCGCTATTCAACGAGTGGCTTTTATAGTTTATCTGAAGTGTTTGATAGTTTTCGTCGTACTCATTATAGCCCTGAAATTGAGCAACGCCGTCATCGTGCGGAGATAACACTTAATCAAAATTTAGGTGATAAATATGGCTCTTTAGCTATCGGATATATACAAGAGGATTATTGGAACAGCAAAAGCAAAAAACAATCAGCAACACTTGGTTATAATAATAGCTGGCAAGGTATCAGCTATGGAATAAATTATACCTACAATAAAAATACAGTTAATCATTCTTATATTGCTGATCAGAAAAGACAAAATGATGATGAACATTTGTTGGCTTTTTCGGTGAATGTGCCCTTTAGCGTATTTGATAATACTTTTTATTATAATTTTAATGCGAATAGTAACAATAATAGTTCAAGTACAGGAAGTGTAGGTATATCGGCATCTCAGTTAAATAATCGACTAAATTGGAGTGTGCAACAAGCATTTACCAATCAAGATCAAGGATCTTCTGGAAATATCAATGCATCCTACAAAGGCCAACTAGGTGATATTACGGGGGGGTACAGTTATAGCAAAGATAATCATAATCTTTACTATGGTGTGAGCGGTAGCGTCGTTGCTCATTCTCAGGGAGTTGTTTTTGGACAGCAACTGGGAGAAACCGCGGCAATCGTAGATATTCCTAATGCGGGTGATATTACGATATTAAATCAAGCGGGAGTTAGGACTAATAACTCAGGGTATGCATTAGTTCCTTATGTCACACCATATCGTAAAAATACTGTCGAGATCGATACATTAAGATTGCCAGAGAATGCTGAAATGGAACTTACCAGTCAGACGGTTTTACCGAGTCGAGGGGCTTTAGTAAAAGCGAATTTTTCAGCAAATGTAGGCTATCGTGTATTAATGACGATAAATTTGGAAAACAAAAAGCCAGTACCATTTGGCGCTCAAGCTATTTTTAAAGACAATAGTCAGTTAAATAGTATTGTAGGTAATGATGGAGAAGTTTATTTATCAGGGCTAAAACAGAAAGGAAACTTTACTATTAAATACAACAATGAAAGCTGTCAGGTAAATTATGATCTATCTGATATTCCAGATTATTTAGGGCTCTATAAAACTACTGTAACTTGCTATTAATTAATTTAAATATCAAACATGGTTATTTTTATAGCTATTGATGTTTGCTA