COG0354


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0354, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Folate-binding protein YgfZ, synthesis and repair of Fe-S clusters
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG0354 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_821 FBDBKF_04120 8482 9465 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S1
1 group_821 EHELCC_05410 67939 68922 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S2
2 group_821 NLDBIP_05730 109004 109987 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S4
3 group_821 LHKJJB_02610 86528 87511 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S3
4 group_821 HKOGLL_06085 8392 9375 1 ygfZ tRNA-modifying protein YgfZ Morganella morganii S5
5 group_821 F4V73_RS08560 1766763 1767746 1 ygfZ tRNA-modifying protein YgfZ Morganella psychrotolerans
6 group_821 PMI_RS09945 2155347 2156333 1 ygfZ tRNA-modifying protein YgfZ Proteus mirabilis HI4320