Homologs in group_3884

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS01250 PMI_RS01250 35.4 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_3884

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3884

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P53522 0.0 732 100 0 357 3 pmfE Putative minor fimbrial subunit PmfE Proteus mirabilis (strain HI4320)
P43663 9.79e-11 65 28 19 342 3 lpfD Protein LpfD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75858 3.6e-10 64 21 12 369 2 elfG Uncharacterized fimbrial-like protein ElfG Escherichia coli (strain K12)
Q8XDC9 1.65e-08 58 22 7 230 2 elfG Uncharacterized fimbrial-like protein ElfG Escherichia coli O157:H7
P75715 1.2e-05 50 25 7 207 2 sfmH Uncharacterized fimbrial-like protein SfmH Escherichia coli (strain K12)
P37925 0.000234 46 24 7 208 3 fimH Type 1 fimbrin D-mannose specific adhesin Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09280
Feature type CDS
Gene -
Product fimbrial protein
Location 2028865 - 2029938 (strand: 1)
Length 1074 (nucleotides) / 357 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3884
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042613 fimbrial protein VF1236 Adherence

Protein Sequence

MILNKKNIHSKSVMLFCAGIVSLMPLHAIAYLQGEVRTNGGPNIFYAVLDHTTFPNNKAGELATVNFSLPDRYDGTVYCPNSRIYDRALTYFKATTDLPPVGNNFYQLNEYVDIKINFEIWGPNPLPTVPFSDIPNNRNNQQGCRVPSSPKPHISSGSSGQLTFRLRKPIINGVSLNGQSLAQMYAMVSHSGAPKTYGSEPISKLVITSGIITTKDKCIFNNGSPITFDFGNVGNTSDYLNGQNYKITRNIPIKCEGGSFTDPNSRIMFKVQTGSSGIASFDSNYLGTTGSVDRSNLGIVLRDKSGTIIPPNQYFSVGKLNNFNGNWEVSAAPIAKAGSKITEGEFSAHATLIAEFM

Flanking regions ( +/- flanking 50bp)

TAAAGATCAACAACCTAAATATTAATAAACTTGATGCCGGTAGGAATAAAATGATCCTCAATAAAAAAAACATTCATTCCAAATCAGTAATGCTATTTTGTGCCGGCATTGTTTCTTTAATGCCATTGCACGCAATTGCTTATTTACAAGGTGAAGTGAGAACCAATGGTGGCCCTAATATTTTCTATGCCGTATTAGATCACACCACCTTTCCTAATAACAAAGCGGGAGAATTAGCAACAGTAAACTTTTCGTTGCCTGATCGCTATGATGGCACGGTATATTGTCCTAACTCACGTATTTATGATCGTGCATTAACCTATTTTAAAGCAACCACTGATTTACCTCCTGTTGGTAATAACTTTTATCAATTAAATGAGTATGTTGATATCAAAATTAATTTTGAAATTTGGGGGCCTAATCCTTTACCCACAGTGCCCTTTTCTGACATACCTAATAATAGAAATAACCAACAAGGTTGCAGAGTACCCTCTTCACCTAAACCGCATATTTCCTCAGGAAGTAGCGGTCAACTCACTTTCCGTTTAAGAAAACCCATTATTAATGGTGTCAGTCTTAATGGGCAATCTCTTGCACAAATGTATGCCATGGTAAGTCACAGCGGTGCGCCAAAAACCTATGGTTCAGAGCCCATTTCTAAATTAGTGATCACCTCGGGGATCATTACCACTAAAGATAAATGTATTTTTAATAATGGTTCACCAATTACCTTTGACTTTGGTAATGTGGGAAATACCTCTGATTATCTCAATGGACAAAACTACAAAATTACTCGCAACATCCCCATCAAATGCGAAGGGGGAAGTTTTACCGATCCTAATAGCAGAATAATGTTTAAAGTTCAGACTGGTAGCTCAGGTATTGCGAGTTTTGATTCTAACTACCTTGGTACAACAGGCTCTGTAGATAGAAGTAACTTAGGTATCGTATTAAGAGATAAGTCAGGTACGATTATCCCACCTAACCAATATTTTTCAGTTGGCAAACTCAATAATTTCAACGGAAATTGGGAAGTAAGTGCAGCCCCCATCGCCAAAGCGGGCAGTAAAATTACTGAAGGTGAATTTTCAGCTCATGCGACACTCATTGCGGAGTTTATGTAATGAAAAACAGCATAATAAAGTCAGCTATAACTTGCTTGTTATTGCTCTCT