Homologs in group_1949

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14240 FBDBKF_14240 77.9 Morganella morganii S1 cvpA colicin V production protein
EHELCC_08040 EHELCC_08040 77.9 Morganella morganii S2 cvpA colicin V production protein
NLDBIP_08365 NLDBIP_08365 77.9 Morganella morganii S4 cvpA colicin V production protein
LHKJJB_05900 LHKJJB_05900 77.9 Morganella morganii S3 cvpA colicin V production protein
HKOGLL_05015 HKOGLL_05015 77.9 Morganella morganii S5 cvpA colicin V production protein
F4V73_RS02670 F4V73_RS02670 76.1 Morganella psychrotolerans cvpA colicin V production protein

Distribution of the homologs in the orthogroup group_1949

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1949

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08550 2.19e-83 245 74 0 159 1 cvpA Colicin V production protein Escherichia coli (strain K12)
P45108 5.32e-57 178 59 0 151 4 cvpA Colicin V production protein homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AT1 1.95e-13 67 28 0 131 4 cvpA Colicin V production protein homolog Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08750
Feature type CDS
Gene cvpA
Product colicin V production protein
Location 1914378 - 1914869 (strand: -1)
Length 492 (nucleotides) / 163 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1949
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02674 Colicin V production protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1286 Nucleotide transport and metabolism (F)
Cell wall/membrane/envelope biogenesis (M)		 FM Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03558 membrane protein required for colicin V production - -

Protein Sequence

MVWIDYAIIAIIGFSALVSLIRGFVREALSLITWGCGFFVASQFYPYLAVYFTRFEDELVRNGIAIVTLFIATLIVGAVINYVISSLVQRTGLSGTDRVLGICFGALRGVLIVSALLFVLGAFTPMADSADWQRSELIPQFNHIIRWFFDYLQNASSFVSEKM

Flanking regions ( +/- flanking 50bp)

GTTAGAATGCTACCGTATTAATGCGGGGCATCGTTATTGGATAGAGATTTATGGTCTGGATAGATTACGCCATTATTGCCATTATCGGTTTTTCTGCATTAGTTAGCCTGATCCGTGGCTTTGTTCGTGAAGCATTATCACTTATCACCTGGGGTTGTGGTTTTTTTGTTGCAAGTCAGTTTTATCCTTATCTAGCCGTCTATTTTACTCGGTTTGAAGATGAGCTGGTTCGTAACGGGATTGCGATTGTCACACTGTTTATTGCAACGCTAATTGTCGGTGCGGTGATTAATTATGTGATTAGCTCTCTTGTTCAACGCACAGGGTTATCAGGTACAGATCGTGTGTTGGGGATCTGTTTCGGGGCTTTAAGAGGTGTGCTGATTGTATCAGCGTTACTTTTTGTCTTGGGTGCTTTTACTCCTATGGCAGACAGTGCCGATTGGCAACGTTCTGAGCTTATTCCTCAATTCAACCATATTATTAGGTGGTTCTTTGACTACCTACAAAATGCGTCAAGTTTCGTGTCGGAGAAAATGTAACCTCTCCGTCTGGCTGATGAGGATCTTTTCATGTGCGGTATTGTCGGTAT