Homologs in group_1911

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14240 FBDBKF_14240 98.2 Morganella morganii S1 cvpA colicin V production protein
EHELCC_08040 EHELCC_08040 98.2 Morganella morganii S2 cvpA colicin V production protein
NLDBIP_08365 NLDBIP_08365 98.2 Morganella morganii S4 cvpA colicin V production protein
LHKJJB_05900 LHKJJB_05900 98.2 Morganella morganii S3 cvpA colicin V production protein
HKOGLL_05015 HKOGLL_05015 98.2 Morganella morganii S5 cvpA colicin V production protein
PMI_RS08750 PMI_RS08750 76.1 Proteus mirabilis HI4320 cvpA colicin V production protein

Distribution of the homologs in the orthogroup group_1911

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1911

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08550 9.87e-86 251 77 0 161 1 cvpA Colicin V production protein Escherichia coli (strain K12)
P45108 9.41e-60 186 62 0 147 4 cvpA Colicin V production protein homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AT1 2.62e-12 64 29 3 134 4 cvpA Colicin V production protein homolog Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02670
Feature type CDS
Gene cvpA
Product colicin V production protein
Location 562053 - 562559 (strand: 1)
Length 507 (nucleotides) / 168 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1911
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02674 Colicin V production protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1286 Nucleotide transport and metabolism (F)
Cell wall/membrane/envelope biogenesis (M)		 FM Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03558 membrane protein required for colicin V production - -

Protein Sequence

MVWIDYAIIAVIAFSALVSLVRGFVREALSLVTWVCAFYVASEFFPLLADYFTRFDDPLVRNGIAIAILFVATLIVGSVINHVIGSLVRTTGLSGTDRVLGVCFGALRGVLIVAAILFFLDSFTQMSQSSDWQQSQLIPQFSHVIRWFFDYLQNASSFLPENFPSPPG

Flanking regions ( +/- flanking 50bp)

TGTTAGAATGCGCCCGTCACTGATGCTGGGCCATCAATTTGGATAGTGATATGGTTTGGATTGATTACGCAATTATTGCAGTTATTGCATTCTCGGCATTAGTCAGCCTGGTTCGTGGTTTCGTTCGTGAAGCCTTATCGTTAGTGACCTGGGTCTGCGCGTTTTATGTGGCCAGCGAGTTTTTCCCGTTGCTGGCGGACTATTTCACGCGTTTTGATGACCCGCTGGTCCGCAACGGTATCGCGATTGCGATTTTGTTTGTCGCGACACTTATTGTCGGCTCGGTGATTAACCATGTTATTGGTTCACTGGTCCGCACGACAGGCTTATCAGGCACAGATCGTGTTCTCGGGGTCTGTTTTGGTGCTCTGCGCGGGGTGCTGATCGTGGCGGCAATATTATTCTTCCTCGACAGCTTCACGCAGATGAGTCAGAGCAGCGACTGGCAGCAGTCACAACTCATTCCCCAATTCAGTCATGTTATCAGGTGGTTCTTTGACTACCTTCAGAATGCGTCCAGTTTCCTGCCGGAGAACTTTCCTTCTCCGCCCGGCTGATGAGGAAAAACTACATGTGTGGTATTGTTGGGATCGTTGGTTTTACACAG