Orthogroup:group_1949


Homologs in group_1949

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14635 FBDBKF_14635 Morganella morganii S1 mfd transcription-repair coupling factor
EHELCC_15440 EHELCC_15440 Morganella morganii S2 mfd transcription-repair coupling factor
NLDBIP_15970 NLDBIP_15970 Morganella morganii S4 mfd transcription-repair coupling factor
LHKJJB_15870 LHKJJB_15870 Morganella morganii S3 mfd transcription-repair coupling factor
HKOGLL_14990 HKOGLL_14990 Morganella morganii S5 mfd transcription-repair coupling factor
F4V73_RS07430 F4V73_RS07430 Morganella psychrotolerans mfd transcription-repair coupling factor
PMI_RS04305 PMI_RS04305 Proteus mirabilis HI4320 mfd transcription-repair coupling factor

Distribution of group_1949 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1949 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1949

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1949.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mfd 7

Product

# Product Occurence
1 transcription-repair coupling factor 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1197 7 LK Replication, recombination and repair (L)
Transcription (K)		 Transcription-repair coupling factor (superfamily II helicase)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03723 7 transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] Nucleotide excision repair -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00270 7 DEAD/DEAH box helicase
PF00271 7 Helicase conserved C-terminal domain
PF02559 7 CarD-like/TRCF RID domain
PF03461 7 TRCF domain
PF17757 7 UvrB interaction domain
PF21132 7 MFD, D3 domain

Annotations of the 460 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase At3g02060, chloroplastic 1
ATP-dependent DNA helicase RecG 27
ATP-dependent DNA helicase homolog RECG, chloroplastic 1
ATP-dependent RNA helicase DBP3 1
ATP-dependent RNA helicase DDX42 5
ATP-dependent RNA helicase ROK1 1
CRISPR-associated helicase Cas3 1
DEAD-box ATP-dependent RNA helicase 6 1
DEAD-box ATP-dependent RNA helicase 8 1
Primosomal protein N' 15
Probable ATP-dependent RNA helicase DDX52 2
Probable ATP-dependent RNA helicase ddx52 1
Transcription-repair-coupling factor 31
UvrABC system protein B 372

Protein length

Min length 1146
Max length 1151
Mean length (sd) 1146.7 (1.9)
Median length 1146.0

Protein length distribution