Homologs in group_1907

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14220 FBDBKF_14220 78.7 Morganella morganii S1 yfcD NUDIX hydrolase YfcD
EHELCC_08060 EHELCC_08060 78.7 Morganella morganii S2 yfcD NUDIX hydrolase YfcD
NLDBIP_08385 NLDBIP_08385 78.7 Morganella morganii S4 yfcD NUDIX hydrolase YfcD
LHKJJB_05880 LHKJJB_05880 78.7 Morganella morganii S3 yfcD NUDIX hydrolase YfcD
HKOGLL_05035 HKOGLL_05035 78.7 Morganella morganii S5 yfcD NUDIX hydrolase YfcD
F4V73_RS02690 F4V73_RS02690 76.1 Morganella psychrotolerans yfcD NUDIX hydrolase YfcD

Distribution of the homologs in the orthogroup group_1907

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1907

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZD12 2.97e-98 284 83 0 169 3 YPO2781 Uncharacterized Nudix hydrolase YPO2781/y1614/YP_2383 Yersinia pestis
P65556 1.19e-92 270 76 0 180 1 yfcD Uncharacterized Nudix hydrolase YfcD Escherichia coli (strain K12)
P65557 1.19e-92 270 76 0 180 3 yfcD Uncharacterized Nudix hydrolase YfcD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P65558 1.19e-92 270 76 0 180 3 yfcD Uncharacterized Nudix hydrolase YfcD Escherichia coli O157:H7
P59196 1.25e-91 267 75 0 180 3 yfcD Uncharacterized Nudix hydrolase YfcD Shigella flexneri
P65559 6.8e-91 266 79 0 168 3 yfcD Uncharacterized Nudix hydrolase YfcD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P65560 6.8e-91 266 79 0 168 3 yfcD Uncharacterized Nudix hydrolase YfcD Salmonella typhi
Q9HUW9 1.97e-35 124 40 2 167 3 PA4841 Uncharacterized Nudix hydrolase PA4841 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9S266 2.34e-25 99 38 3 166 3 SCO1686 Uncharacterized Nudix hydrolase SCO1686 Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9ZG11 3.83e-16 75 33 5 167 3 None Uncharacterized Nudix hydrolase orf19 Rhodococcus erythropolis
Q9RY71 8.25e-12 63 31 3 149 1 DR_0079 Nudix hydrolase DR_0079 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q8Y9Z9 5.54e-09 55 28 5 153 3 lmo0368 Uncharacterized Nudix hydrolase lmo0368 Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q92ES1 8.6e-09 55 28 6 158 3 lin0387 Uncharacterized Nudix hydrolase lin0387 Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
B1VTW2 9.55e-09 55 30 3 152 3 idi Isopentenyl-diphosphate Delta-isomerase Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
Q9X7Q6 1.9e-08 55 29 3 152 3 idi Isopentenyl-diphosphate Delta-isomerase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q82MJ7 6.26e-08 53 28 3 152 3 idi Isopentenyl-diphosphate Delta-isomerase Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)
Q8YKE7 7.15e-06 47 33 1 81 3 all7351 Uncharacterized Nudix hydrolase all7351 Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q97LV8 9.28e-06 47 30 2 93 3 CA_C0446 Uncharacterized Nudix hydrolase CA_C0446 Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
A8GDW2 1.45e-05 46 27 0 88 3 idi Isopentenyl-diphosphate Delta-isomerase Serratia proteamaculans (strain 568)
Q38929 2.73e-05 46 26 6 160 1 IPP1 Isopentenyl-diphosphate Delta-isomerase I, chloroplastic Arabidopsis thaliana
Q8L831 3.55e-05 46 34 1 70 1 NUDT3 Nudix hydrolase 3 Arabidopsis thaliana
B0RIB7 4.96e-05 45 28 6 168 3 idi Isopentenyl-diphosphate Delta-isomerase Clavibacter sepedonicus
Q9BXS1 0.000146 44 25 3 132 1 IDI2 Isopentenyl-diphosphate delta-isomerase 2 Homo sapiens
Q5YYB6 0.000199 43 29 6 143 3 idi Isopentenyl-diphosphate Delta-isomerase Nocardia farcinica (strain IFM 10152)
A5CV36 0.000217 43 27 6 168 3 idi Isopentenyl-diphosphate Delta-isomerase Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
O48964 0.000218 43 26 7 160 2 IPI1 Isopentenyl-diphosphate Delta-isomerase I Camptotheca acuminata
Q7N0A6 0.00028 43 28 1 95 3 idi2 Isopentenyl-diphosphate Delta-isomerase 2 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q6A5Z1 0.000344 43 28 5 149 3 idi Isopentenyl-diphosphate Delta-isomerase Cutibacterium acnes (strain DSM 16379 / KPA171202)
Q42553 0.000485 43 26 7 160 1 IPP2 Isopentenyl-diphosphate Delta-isomerase II, chloroplastic Arabidopsis thaliana
A1T5G2 0.001 41 29 2 97 3 idi Isopentenyl-diphosphate Delta-isomerase Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08725
Feature type CDS
Gene yfcD
Product NUDIX hydrolase YfcD
Location 1909785 - 1910327 (strand: -1)
Length 543 (nucleotides) / 180 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1907
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00293 NUDIX domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1443 Lipid transport and metabolism (I) I Isopentenyldiphosphate isomerase

Protein Sequence

MEQENTAVVEWVDIVDEKNEVVAQATRQQMRAENLRHRATYIVVHDGMGKILAQRRTETKDFYPGWLDATAGGVVQQGENALESARREAEEELGIAGVPFAEHGQFYYDDESCRVWGSLFSCVSHGPFALQPEEIEEVCWLTPLEITERCDEFTPDSLKALSLWLTRNNSTRLDTKETTD

Flanking regions ( +/- flanking 50bp)

AGGATAAAAATTACGATCGTTTAGCATCGATTAAAAAAGGTTTGTTGAGGATGGAACAAGAAAATACGGCAGTGGTCGAGTGGGTTGATATTGTTGATGAAAAAAATGAAGTTGTTGCACAAGCAACACGTCAACAAATGCGAGCAGAAAACCTACGTCACCGAGCAACTTATATTGTCGTGCACGATGGCATGGGAAAAATTTTGGCACAACGCCGTACTGAAACAAAAGATTTCTATCCAGGTTGGTTAGATGCAACCGCGGGTGGTGTAGTACAACAAGGTGAAAATGCACTCGAAAGTGCACGTCGTGAAGCAGAAGAAGAGCTAGGTATTGCCGGGGTTCCTTTTGCCGAACATGGACAATTCTATTATGACGATGAGAGTTGCCGCGTTTGGGGAAGCTTATTTAGTTGTGTATCACATGGGCCATTTGCATTACAGCCAGAAGAAATCGAGGAAGTATGCTGGCTTACTCCCTTAGAAATCACTGAACGTTGTGATGAATTTACCCCTGATTCACTTAAAGCACTCTCTCTATGGTTAACGCGAAATAATAGTACTCGCTTGGACACAAAAGAAACCACTGACTAAGGGGTACTTTGTCCGAGTTCTAAACGATAAGCATAGTTGATAACGGTATT