Homologs in group_222

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00405 FBDBKF_00405 91.8 Morganella morganii S1 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
EHELCC_01140 EHELCC_01140 91.8 Morganella morganii S2 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
NLDBIP_02320 NLDBIP_02320 91.8 Morganella morganii S4 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
LHKJJB_03835 LHKJJB_03835 91.8 Morganella morganii S3 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
HKOGLL_03210 HKOGLL_03210 91.8 Morganella morganii S5 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
F4V73_RS06385 F4V73_RS06385 89.6 Morganella psychrotolerans nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
F4V73_RS17905 F4V73_RS17905 60.2 Morganella psychrotolerans nrdB class Ia ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_222

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_222

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69924 0.0 704 88 0 376 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 0.0 704 88 0 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P37427 0.0 700 87 0 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43755 0.0 668 83 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57275 0.0 613 74 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AS5 0.0 597 71 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9W4 0.0 565 71 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P11156 4.76e-136 396 52 4 383 3 NRDB Ribonucleoside-diphosphate reductase subunit beta Enterobacteria phage T4
Q9ZKC3 5.69e-28 115 25 7 349 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
P55983 2.51e-27 113 25 7 349 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
O83092 6.69e-23 101 25 12 348 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q9KFH7 5.37e-18 87 24 11 323 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q9Z6S4 2.01e-17 85 26 10 297 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
Q9PL92 1.31e-16 83 22 8 296 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
O84835 1.97e-16 83 22 8 296 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P42521 2.37e-15 79 26 9 312 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
P36603 4.99e-15 79 23 11 363 3 suc22 Ribonucleoside-diphosphate reductase small chain Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P9WH71 1.66e-14 77 25 8 283 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 1.66e-14 77 25 8 283 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9CBQ2 1.79e-14 77 25 9 283 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P0DKH3 2.03e-14 77 23 10 356 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
P49730 4.28e-14 75 22 8 362 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
P50651 9.79e-13 72 24 8 324 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
Q4R741 1.61e-12 71 24 7 307 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
P50649 1.75e-12 71 24 8 306 3 RNR2 Ribonucleoside-diphosphate reductase small subunit Plasmodium falciparum (isolate FCR-3 / Gambia)
Q5R9G0 2.63e-12 70 23 7 307 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
Q7LG56 2.83e-12 70 23 7 307 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
Q6PEE3 2.94e-12 70 23 6 307 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P50650 4.68e-12 70 25 9 306 2 RNR2 Ribonucleoside-diphosphate reductase small chain Plasmodium falciparum (isolate Dd2)
Q197B2 6.93e-12 69 24 9 295 3 IIV3-048L Probable ribonucleoside-diphosphate reductase small subunit 048L Invertebrate iridescent virus 3
O67475 1.28e-11 69 27 7 233 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
O67475 3.72e-05 49 25 5 115 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
P9WH73 1.4e-11 68 24 8 299 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 1.4e-11 68 24 8 299 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P37146 1.46e-11 68 24 7 289 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
P17424 1.84e-11 68 25 5 265 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9DHU2 7.28e-11 66 25 10 308 3 20L Ribonucleoside-diphosphate reductase small chain Yaba-like disease virus
P09938 8.6e-11 66 24 11 338 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P11158 1.92e-10 65 25 9 327 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
P20493 2.38e-10 64 25 9 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
Q9C167 4.05e-10 64 23 10 333 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
P0C8I0 8.06e-10 63 22 9 327 3 Ken-056 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Pig/Kenya/KEN-50/1950)
O57175 1.01e-09 62 24 9 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
P50621 1.24e-09 62 23 8 290 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O15910 1.34e-09 62 22 10 334 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
P48592 1.61e-09 62 23 9 327 1 RnrS Ribonucleoside-diphosphate reductase subunit M2 Drosophila melanogaster
P29883 2.76e-09 61 24 9 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
Q9LSD0 3.94e-09 61 21 10 359 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
P42170 4.03e-09 61 23 7 301 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Caenorhabditis elegans
Q9QTF2 7.57e-09 60 23 10 310 3 RR-2 Ribonucleoside-diphosphate reductase small chain Red sea bream iridovirus
A0A7H0DN21 7.67e-09 60 24 9 327 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
P0DSS7 8.1e-09 60 23 8 320 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
Q9XC20 9.91e-09 60 22 10 325 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
P0C8I2 1.04e-08 59 21 7 303 3 War-054 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Warthog/Namibia/Wart80/1980)
P0C8I1 1.12e-08 59 21 7 303 3 Pret-056 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
O46310 1.13e-08 59 23 7 308 3 None Ribonucleoside-diphosphate reductase small subunit Leishmania amazonensis
P11157 1.7e-08 59 22 9 327 1 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Mus musculus
P32209 2.5e-08 58 23 6 291 3 C14L Ribonucleoside-diphosphate reductase small chain Swinepox virus (strain Kasza)
P42492 2.51e-08 58 21 7 303 2 Ba71V-044 Ribonucleoside-diphosphate reductase small chain African swine fever virus (strain Badajoz 1971 Vero-adapted)
P0DSS8 4.12e-08 57 22 7 331 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
Q60561 4.92e-08 58 23 9 325 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
P26713 5.05e-08 57 21 7 303 3 Mal-052 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
Q91FE8 7.17e-08 57 19 7 327 3 IIV6-376L Probable ribonucleoside-diphosphate reductase small subunit 376L Invertebrate iridescent virus 6
O30601 9.43e-08 57 22 8 290 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 9.43e-08 57 22 8 290 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
P07201 9.75e-08 57 22 7 319 2 None Ribonucleoside-diphosphate reductase small chain Spisula solidissima
P79733 1.23e-07 56 23 9 328 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
Q4KLN6 2.58e-07 55 22 9 328 2 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Rattus norvegicus
P31350 3.08e-07 55 23 8 298 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
Q8SRR2 7.32e-07 53 22 9 332 3 ECU06_0730 Ribonucleoside-diphosphate reductase small chain Encephalitozoon cuniculi (strain GB-M1)
Q4R7Q7 7.79e-07 54 23 6 294 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
P75461 8.46e-07 53 21 7 283 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q6GZQ8 1.17e-06 53 27 7 163 3 FV3-067L Putative ribonucleoside-diphosphate reductase small subunit 067L Frog virus 3 (isolate Goorha)
P47471 1.89e-05 49 19 8 305 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q6R7K3 0.000166 47 24 12 298 3 ORF20 Ribonucleoside-diphosphate reductase small chain Ostreid herpesvirus 1 (isolate France)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08515
Feature type CDS
Gene nrdB
Product class Ia ribonucleoside-diphosphate reductase subunit beta
Location 1857868 - 1858998 (strand: 1)
Length 1131 (nucleotides) / 376 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_222
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MSYTTFSQVRNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDYNALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKARSNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTDDLSNFEL

Flanking regions ( +/- flanking 50bp)

GCAGATTCAGATTGTGAAGGCGGCGCGTGTAAAATTTAATTGAGGAAGCTATGTCTTATACCACTTTTTCACAAGTTAGAAATGATCAGCTTCAGGAGCCCATGTTTTTTGGGCAACCTGTTAACGTAGCGCGTTATGATCAGCAAAAGTACCCTATTTTTGAAAAACTAATTGAAAAGCAACTCTCTTTCTTCTGGCGTCCAGAAGAAGTTGATGTTTCTCGTGATCGTATTGACTACAATGCGCTTCCCGATCACGAAAAACACATTTTTATTAGTAATTTAAAATATCAAACTCTGCTTGATTCGATCCAAGGTAGAAGCCCTAACGTGGCATTTTTACCTTTAATTTCGATTCCAGAATTAGAAACTTGGGTAGAAACATGGTCGTTCTCTGAAACCATCCATTCACGCTCTTATACCCATATTATTCGTAATATCGTCAACGATCCGTCGGTCGTTTTTGATGATATTGTTGAAAATGAAGAGATTTTAAAACGTGCTCGTGATATCTCATCTTATTATGATGAGTTAATCAATTTAACTAACCTTTACCATATGTTTGGTGAAGGTACGCATCAAATAAAAGGTAAAACTGTTGAAGTTACTTTACGTAAGCTCAAAAAACAGCTTTACCTATGCTTAATGAGTGTTAATGCTTTAGAAGCGATTCGTTTCTATGTCAGCTTTGCCTGTTCATTTGCCTTTGCAGAGCGCGAATTGATGGAAGGTAACGCTAAAATCATTAAATTGATTGCCCGTGATGAAGCATTACACTTAACTGGCACACAGCATATGCTCAATTTACTGCGTTCAGGTCAAGATGATCCTGAAATGGCCGAAATTGCCGCAGAATGCGAACAAGAATGTTATGACCTATTTGTTGAAGCAGCAGAGCAAGAAAAAGAGTGGGCAGAATACCTATTCTCAGAAGGCTCTATGATCGGTTTAAATAAAGAGATCCTTTGCCAATATGTTGAATATATTACTAATATTCGTATGCAGGCAGTAGGACTTAAATTGCCGTTTAAAGCACGTTCAAACCCTATTCCATGGATTAATGCTTGGTTAGTATCTGATAATGTGCAAGTTGCACCACAAGAAGTTGAAGTAAGCTCATATCTAGTAGGTCAAATCGACTCACAAGTAGATACTGATGATTTAAGTAACTTCGAACTGTAAAACAGAGAACTAGCGCTATACATTATGGCATCTCATAAAGTGACCCTGCA