Homologs in group_222

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00405 FBDBKF_00405 96.5 Morganella morganii S1 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
EHELCC_01140 EHELCC_01140 96.5 Morganella morganii S2 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
NLDBIP_02320 NLDBIP_02320 96.5 Morganella morganii S4 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
LHKJJB_03835 LHKJJB_03835 96.5 Morganella morganii S3 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
HKOGLL_03210 HKOGLL_03210 96.5 Morganella morganii S5 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
F4V73_RS17905 F4V73_RS17905 61.0 Morganella psychrotolerans nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
PMI_RS08515 PMI_RS08515 89.6 Proteus mirabilis HI4320 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_222

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_222

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69924 0.0 694 86 0 376 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 0.0 694 86 0 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P37427 0.0 691 86 0 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43755 0.0 664 83 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AS5 0.0 603 72 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57275 0.0 597 72 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9W4 0.0 551 69 0 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P11156 9.48e-138 400 52 3 383 3 NRDB Ribonucleoside-diphosphate reductase subunit beta Enterobacteria phage T4
Q9ZKC3 6.16e-28 115 25 6 349 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
P55983 2.58e-27 113 25 6 349 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
O83092 1.64e-20 94 24 11 352 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q9KFH7 1.6e-18 89 24 11 322 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q9Z6S4 2.09e-16 82 25 9 291 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
Q9PL92 3.61e-16 82 24 10 291 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
O84835 6.68e-16 81 24 10 291 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P0DKH3 7.5e-16 81 25 12 357 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
P49730 1.04e-15 80 23 9 359 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
P36603 5.72e-14 76 24 10 342 3 suc22 Ribonucleoside-diphosphate reductase small chain Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P42521 5.44e-13 72 25 9 308 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
Q9CBQ2 1.27e-12 71 25 9 278 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P50649 1.02e-11 68 24 7 305 3 RNR2 Ribonucleoside-diphosphate reductase small subunit Plasmodium falciparum (isolate FCR-3 / Gambia)
P9WH71 1.16e-11 68 24 8 278 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 1.16e-11 68 24 8 278 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P09938 1.65e-11 68 23 12 389 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P50651 1.96e-11 68 23 9 326 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
O67475 2.06e-11 68 27 9 244 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
O67475 9.24e-06 51 27 5 115 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
Q197B2 4.33e-11 67 23 9 292 3 IIV3-048L Probable ribonucleoside-diphosphate reductase small subunit 048L Invertebrate iridescent virus 3
Q9LSD0 5.84e-11 66 23 10 341 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
P48592 7.83e-11 66 24 9 324 1 RnrS Ribonucleoside-diphosphate reductase subunit M2 Drosophila melanogaster
P50650 9.04e-11 66 23 7 305 2 RNR2 Ribonucleoside-diphosphate reductase small chain Plasmodium falciparum (isolate Dd2)
P9WH73 1.66e-10 65 26 4 205 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 1.66e-10 65 26 4 205 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q4R741 3.75e-10 64 23 7 307 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
Q7LG56 6.24e-10 63 23 7 307 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
Q5R9G0 6.35e-10 63 23 7 307 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
Q6PEE3 1.07e-09 62 22 5 307 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P11158 1.37e-09 62 25 9 327 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
P20493 1.8e-09 62 25 9 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
P17424 2.1e-09 61 24 6 267 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9C167 2.52e-09 62 23 9 315 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q9XC20 4.67e-09 60 24 9 291 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
O57175 5.78e-09 60 24 9 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
O15910 5.96e-09 60 21 8 313 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
P37146 6.45e-09 60 23 6 267 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
Q9QTF2 1.5e-08 59 22 10 305 3 RR-2 Ribonucleoside-diphosphate reductase small chain Red sea bream iridovirus
P29883 1.71e-08 58 24 9 327 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
P0C8I0 1.9e-08 58 21 7 327 3 Ken-056 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Pig/Kenya/KEN-50/1950)
P79733 1.94e-08 59 22 7 326 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
P50621 2.24e-08 58 23 9 290 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
A0A7H0DN21 2.55e-08 58 23 8 324 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
P0DSS8 2.77e-08 58 23 8 324 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
Q91FE8 3.55e-08 58 21 12 332 3 IIV6-376L Probable ribonucleoside-diphosphate reductase small subunit 376L Invertebrate iridescent virus 6
P0DSS7 3.8e-08 58 24 8 320 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
P31350 7.49e-08 57 22 8 322 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
Q4R7Q7 8.96e-08 57 22 8 322 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
Q6GZQ8 1.31e-07 56 26 7 185 3 FV3-067L Putative ribonucleoside-diphosphate reductase small subunit 067L Frog virus 3 (isolate Goorha)
Q60561 1.71e-07 56 23 8 325 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
O46310 2.94e-07 55 21 8 311 3 None Ribonucleoside-diphosphate reductase small subunit Leishmania amazonensis
P42170 1.64e-06 53 22 7 298 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Caenorhabditis elegans
P47471 2.07e-06 52 21 8 292 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P07201 2.07e-06 52 22 8 310 2 None Ribonucleoside-diphosphate reductase small chain Spisula solidissima
P75461 4.66e-06 51 21 7 284 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
O30601 1.51e-05 50 23 4 198 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 1.51e-05 50 23 4 198 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
Q7T6Y9 5.79e-05 48 21 8 296 3 RNR2 Ribonucleoside-diphosphate reductase small chain Acanthamoeba polyphaga mimivirus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06385
Feature type CDS
Gene nrdB
Product class Ia ribonucleoside-diphosphate reductase subunit beta
Location 1332949 - 1334079 (strand: 1)
Length 1131 (nucleotides) / 376 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_222
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MAYTTFSQVHNDQLKEPMFFGQPVNVARYDQQKYPIFESLIEKQLSFFWRPEEVDVSRDRIDYNALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVANEEIIKRAKDIAGYYDDLIRMTGEYHMFGEGSHTANGKTLNVSLRALKRQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKECEQDCYDLFVRAAEQEKEWADYLFCNGSMIGLNKEILCQYVDYITNIRMQAVGLPLPFNVRSNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEVNTDELSSFEL

Flanking regions ( +/- flanking 50bp)

ATGATGATGGTTGTGAAGGCGGCGCGTGTAAAATTTAAGGTGAATAAATAATGGCTTATACAACATTTTCACAGGTACATAATGATCAGCTCAAAGAACCGATGTTCTTCGGGCAGCCTGTTAACGTCGCCCGTTATGATCAGCAAAAATACCCGATTTTTGAATCATTAATCGAGAAACAACTCTCCTTCTTCTGGCGTCCGGAAGAAGTGGATGTGTCCCGTGACCGTATTGACTACAATGCGTTGCCGGATCACGAAAAACATATTTTTATCAGTAATCTGAAATACCAGACACTGCTGGATTCCATTCAGGGACGCAGCCCGAATGTGGCGCTGCTGCCTCTGATCTCGATTCCGGAGCTGGAAACCTGGGTGGAAACCTGGTCTTTCTCGGAAACGATCCACTCCCGCTCTTACACGCATATTATCCGTAATATCGTGAATGACCCTTCAATTGTCTTCGACGATATCGTGGCAAATGAAGAAATCATCAAGCGGGCAAAAGATATCGCCGGGTATTATGACGACCTGATCCGTATGACCGGTGAATACCATATGTTTGGTGAAGGATCGCATACCGCCAACGGTAAAACTCTCAATGTGTCGCTGCGCGCCCTGAAACGCCAGTTGTACCTGTGTCTGATGAGTGTCAATGCACTGGAAGCGATTCGCTTTTATGTCAGTTTCGCCTGCTCATTTGCCTTTGCCGAGCGCGAACTGATGGAAGGAAACGCGAAAATAATCAAACTGATCGCCCGCGATGAAGCTCTGCATCTCACCGGCACTCAGCATATGCTGAACCTGCTGCGCAGTGGTCAGGATGACCCGGAAATGGCAGAAATTGCCAAAGAATGCGAGCAGGATTGCTATGATCTGTTTGTCCGTGCGGCAGAACAGGAAAAAGAGTGGGCAGATTATCTGTTCTGTAACGGCTCCATGATCGGCCTGAACAAAGAAATTCTCTGCCAGTATGTGGACTATATTACGAATATCCGCATGCAGGCAGTGGGTCTTCCGCTGCCGTTCAATGTCCGCTCCAATCCGATCCCGTGGATAAATGCATGGCTGGTCTCTGACAATGTGCAGGTCGCCCCGCAGGAAGTGGAAGTCAGTTCTTACCTGGTCGGTCAGATAGACTCTGAAGTCAATACTGATGAACTGAGTAGTTTCGAGCTCTGATGCCAAGCCATAAAATTACCCTGCATGGCAACATGCAGGGGATACAACTG