Homologs in group_1834

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13595 FBDBKF_13595 62.4 Morganella morganii S1 bamC outer membrane protein assembly factor BamC
EHELCC_08500 EHELCC_08500 62.4 Morganella morganii S2 bamC outer membrane protein assembly factor BamC
NLDBIP_08825 NLDBIP_08825 62.4 Morganella morganii S4 bamC outer membrane protein assembly factor BamC
LHKJJB_05440 LHKJJB_05440 62.4 Morganella morganii S3 bamC outer membrane protein assembly factor BamC
HKOGLL_05475 HKOGLL_05475 62.4 Morganella morganii S5 bamC outer membrane protein assembly factor BamC
F4V73_RS03170 F4V73_RS03170 62.4 Morganella psychrotolerans bamC outer membrane protein assembly factor BamC

Distribution of the homologs in the orthogroup group_1834

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1834

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
C7BGW7 2.59e-155 442 59 2 346 3 bamC Outer membrane protein assembly factor BamC Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)
D3VI76 4.68e-154 439 60 2 347 3 bamC Outer membrane protein assembly factor BamC Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6)
Q0WCK7 1.95e-120 354 53 0 345 3 bamC Outer membrane protein assembly factor BamC Yersinia pestis
P0A904 2.34e-113 335 48 1 345 3 bamC Outer membrane protein assembly factor BamC Shigella flexneri
P0A903 2.34e-113 335 48 1 345 1 bamC Outer membrane protein assembly factor BamC Escherichia coli (strain K12)
E8XP36 1.45e-110 329 45 0 343 3 bamC Outer membrane protein assembly factor BamC Rahnella sp. (strain Y9602)
Q9KQ48 7.07e-49 170 30 3 334 3 bamC Outer membrane protein assembly factor BamC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B7VIM1 2.66e-43 155 29 4 330 3 bamC Outer membrane protein assembly factor BamC Vibrio atlanticus (strain LGP32)
E1SLW4 1.38e-26 111 27 13 356 3 bamC Outer membrane protein assembly factor BamC Ferrimonas balearica (strain DSM 9799 / CCM 4581 / KCTC 23876 / PAT)
Q8EFT6 5.59e-25 107 25 13 347 3 bamC Outer membrane protein assembly factor BamC Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q9CLZ8 3.12e-22 99 25 11 344 3 bamC Outer membrane protein assembly factor BamC Pasteurella multocida (strain Pm70)
A8FW15 7.49e-22 98 25 12 369 3 bamC Outer membrane protein assembly factor BamC Shewanella sediminis (strain HAW-EB3)
Q15SZ5 1.39e-21 97 20 8 339 3 bamC Outer membrane protein assembly factor BamC Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
E6RM71 1.23e-19 92 26 15 358 3 bamC Outer membrane protein assembly factor BamC Pseudoalteromonas sp. (strain SM9913)
A6VKA3 2.98e-17 84 21 9 335 3 bamC Outer membrane protein assembly factor BamC Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
H2FU77 3.39e-17 84 25 7 327 3 bamC Outer membrane protein assembly factor BamC Oceanimonas sp. (strain GK1 / IBRC-M 10197)
A1SVX3 3.38e-09 61 24 13 345 3 bamC Outer membrane protein assembly factor BamC Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
C7RCP6 2.13e-07 55 23 13 365 3 bamC Outer membrane protein assembly factor BamC Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07615
Feature type CDS
Gene bamC
Product outer membrane protein assembly factor BamC
Location 1661064 - 1662110 (strand: -1)
Length 1047 (nucleotides) / 348 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1834
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06804 NlpB/DapX lipoprotein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3317 Cell wall/membrane/envelope biogenesis (M) M Outer membrane beta-barrel protein assembly factor BamC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07287 outer membrane protein assembly factor BamC - -

Protein Sequence

MATLLHKSKIMKVAGLSLVVLLAACSSDQRYKRQVSGDESYLESAALKNLVVPAGMVLPLQNGEYDIPTPKKSEPVGLALDIRPPTQALNLLSGSRSENNADNSRLLLPNTPENTTLYEQVSAVLADKGVALAKSDAGQKQIVTDWITWTRADENVPFQSRHNLAISQSGNVVILTITNTGLRQGENEISDPMEVKRYNTLLLNEVVDGLNRMRNLSENSATSNLQGIIDVQTGSDNAGLPVIIVRAPFDVVWDRLPIALESVGMKMGDRTRSKGSIEVTYKGLSSASWSTLGVDKPTINEGDYKLQVGDLNNRSSLQFISDKGKPLTQSENDQMVAAMKAAFSKPIK

Flanking regions ( +/- flanking 50bp)

AGAGAAAGCGCTGTTAACAGCGGGAATACTGTAAAACTTAGGGAATTTTAATGGCAACACTATTGCATAAATCAAAGATTATGAAAGTCGCGGGTCTGTCGCTGGTGGTTTTATTGGCAGCCTGTTCCAGTGATCAGCGCTATAAACGTCAAGTCAGTGGTGACGAGTCGTATTTAGAGTCAGCAGCGCTAAAAAATTTAGTTGTCCCAGCGGGTATGGTGTTGCCTTTGCAAAATGGGGAATATGATATTCCTACGCCTAAAAAGAGTGAACCTGTGGGTTTAGCATTAGATATTCGCCCACCAACACAGGCTTTAAACTTATTAAGTGGCTCACGTAGTGAGAATAATGCGGATAATAGCCGACTGTTATTACCCAACACGCCCGAAAATACCACCTTATACGAGCAAGTTTCTGCTGTTTTAGCGGATAAAGGTGTGGCACTGGCTAAAAGTGATGCAGGACAAAAACAGATTGTTACCGATTGGATCACTTGGACTCGTGCTGATGAAAATGTGCCTTTCCAAAGTCGCCATAATTTAGCGATAAGCCAGTCAGGTAATGTTGTGATATTAACGATTACGAATACTGGGTTACGCCAAGGTGAAAACGAGATTTCCGATCCAATGGAAGTGAAGCGTTATAACACCTTACTATTAAATGAAGTGGTTGACGGTTTAAACCGCATGCGTAACTTAAGTGAAAATAGCGCAACGAGTAATTTGCAAGGTATTATCGACGTACAAACGGGAAGTGATAATGCCGGACTGCCTGTCATTATTGTTCGAGCACCATTTGATGTTGTGTGGGATAGATTACCTATCGCGCTAGAAAGCGTGGGTATGAAAATGGGCGATCGTACTCGTTCGAAAGGTTCAATTGAAGTGACTTATAAAGGCTTAAGTAGTGCAAGTTGGAGCACGTTAGGGGTTGATAAACCGACAATTAATGAAGGGGATTACAAACTACAAGTCGGTGACTTAAATAACCGCAGTAGTTTGCAATTTATCAGTGATAAAGGTAAACCTCTTACACAGTCTGAAAATGATCAGATGGTTGCTGCAATGAAAGCGGCCTTTAGTAAGCCAATAAAATAAAAGCTCTTTTTATCTATTAAATATCAGGCCGTACATAAAATGTGCGGCCT