Homologs in group_891

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04655 FBDBKF_04655 55.2 Morganella morganii S1 deoR DNA-binding transcriptional regulator LsrR, DeoR family
EHELCC_05945 EHELCC_05945 55.2 Morganella morganii S2 deoR DNA-binding transcriptional regulator LsrR, DeoR family
NLDBIP_06265 NLDBIP_06265 55.2 Morganella morganii S4 deoR DNA-binding transcriptional regulator LsrR, DeoR family
LHKJJB_03145 LHKJJB_03145 55.2 Morganella morganii S3 deoR DNA-binding transcriptional regulator LsrR, DeoR family
HKOGLL_06620 HKOGLL_06620 55.2 Morganella morganii S5 deoR DNA-binding transcriptional regulator LsrR, DeoR family
F4V73_RS09105 F4V73_RS09105 57.1 Morganella psychrotolerans - sugar-binding transcriptional regulator

Distribution of the homologs in the orthogroup group_891

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_891

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39356 6.98e-140 402 59 1 323 3 yjhU Uncharacterized transcriptional regulator YjhU Escherichia coli (strain K12)
P39140 1.14e-42 152 32 6 307 1 deoR Deoxyribonucleoside regulator Bacillus subtilis (strain 168)
A7ZLX0 5.28e-33 127 25 9 336 3 lsrR Transcriptional regulator LsrR Escherichia coli O139:H28 (strain E24377A / ETEC)
B1IRU8 2.24e-32 125 25 9 336 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A065 2.24e-32 125 25 9 336 3 lsrR Transcriptional regulator LsrR Escherichia coli O9:H4 (strain HS)
Q8XAY6 2.24e-32 125 25 9 336 3 lsrR Transcriptional regulator LsrR Escherichia coli O157:H7
P76141 4.3e-32 124 25 9 336 1 lsrR Transcriptional regulator LsrR Escherichia coli (strain K12)
B1XEA0 4.3e-32 124 25 9 336 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain K12 / DH10B)
B1LFA3 1.23e-31 123 25 9 336 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain SMS-3-5 / SECEC)
Q7N2E0 3.47e-29 117 28 10 315 3 lsrR Transcriptional regulator LsrR Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q8Z2X4 3.6e-28 114 25 10 333 3 lsrR Transcriptional regulator LsrR Salmonella typhi
A9MZF9 3.6e-28 114 25 10 333 3 lsrR Transcriptional regulator LsrR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PJE8 3.6e-28 114 25 10 333 3 lsrR Transcriptional regulator LsrR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ5 9.53e-28 113 25 10 333 1 lsrR Transcriptional regulator LsrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57HE3 3.8e-27 111 25 8 329 3 lsrR Transcriptional regulator LsrR Salmonella choleraesuis (strain SC-B67)
A4WER5 7.76e-26 108 26 10 334 3 lsrR Transcriptional regulator LsrR Enterobacter sp. (strain 638)
A6TEB9 1.4e-24 104 26 8 330 3 lsrR Transcriptional regulator LsrR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P37078 4.16e-20 92 25 8 320 1 sorC Sorbitol operon regulator Klebsiella pneumoniae
Q2YIQ4 1.63e-18 87 24 5 317 2 eryD Erythritol catabolism regulatory protein EryD Brucella abortus (strain 2308)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07495
Feature type CDS
Gene -
Product sugar-binding transcriptional regulator
Location 1633552 - 1634535 (strand: -1)
Length 984 (nucleotides) / 327 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_891
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04198 Putative sugar-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2390 Transcription (K) K DNA-binding transcriptional regulator LsrR, DeoR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05346 deoxyribonucleoside regulator - -

Protein Sequence

MDNNSLKNASLFDNDPVLYAAWLYYQDGLSQSEVANIMSVSRVTVVKYLHLAREKGFVNISLDSSVFSTIDYSIRIKAKFNLNNVLILPDEEKNKSQQTSNMNRERLAKAGAMYLSQIISNDDILGVAWGRTIHKLGHYLPTKTLENVTVLQMIGAVAPQPDFTTAESAALIANKFSGCSINLHVPAVVSNARLAMELQAEPIIRRNFSALNQCNKALFVVGNTQDDNPLITTGVLTTNEMAQYRDLGAVGVICGRFYDAQGNPLLSDIDLRIMGISLAQLRQIPQRIFIAGGVENVAATIGAIKGGYATDIVIDEVTALALLELSI

Flanking regions ( +/- flanking 50bp)

TAAAATAAATTAATTATTAATAAGATTTATAAAAAATAGTGGGGTTTAAAATGGATAATAATTCGCTAAAAAATGCGAGTTTATTTGATAATGATCCCGTTCTTTATGCTGCATGGCTTTACTATCAGGACGGACTCAGTCAAAGTGAAGTTGCAAATATTATGAGCGTTTCTCGAGTGACTGTTGTGAAGTATTTACATCTCGCGAGAGAAAAAGGTTTCGTTAATATAAGCTTGGATTCATCAGTATTTTCTACGATTGATTATTCAATCAGAATAAAAGCAAAATTTAATCTTAATAATGTGCTTATTTTACCTGATGAAGAAAAGAATAAATCGCAACAAACATCAAATATGAATCGAGAAAGATTAGCTAAAGCAGGAGCTATGTATCTTTCTCAGATAATCAGCAATGATGATATTTTAGGCGTAGCTTGGGGAAGAACAATCCATAAACTAGGGCACTATCTCCCCACTAAAACACTAGAAAATGTCACTGTGTTACAAATGATTGGGGCTGTAGCTCCACAACCTGATTTTACTACTGCGGAATCTGCCGCTTTGATCGCCAATAAGTTTTCAGGTTGCAGTATTAATTTGCATGTACCGGCTGTAGTGTCAAATGCACGTTTGGCAATGGAGCTACAAGCAGAACCCATAATACGGCGTAATTTCTCTGCTTTAAATCAATGTAATAAAGCTTTGTTTGTAGTGGGTAATACTCAAGATGACAATCCTTTGATTACAACAGGCGTACTCACCACAAATGAGATGGCACAATATCGCGATTTAGGTGCTGTTGGTGTCATTTGTGGTCGATTCTATGATGCACAAGGTAATCCTCTGCTTTCTGATATCGACCTTAGAATTATGGGAATTAGTCTTGCACAGTTAAGACAGATCCCACAGCGTATTTTTATTGCTGGAGGCGTTGAAAATGTTGCTGCAACCATAGGCGCAATAAAAGGGGGATATGCTACAGATATTGTCATCGATGAAGTGACGGCATTAGCATTATTGGAATTGAGTATTTAATAGTGAGATCCTCGTTTAAACGAGGATTTGTTATTAATATTGCTGTTATT