COG2390


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2390, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator LsrR, DeoR family
Function(s) descr. Transcription (K)

Occurence in the database

COG2390 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2521 FBDBKF_02195 128710 129633 1 lsrR transcriptional regulator LsrR Morganella morganii S1
1 group_891 FBDBKF_04655 129967 130953 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S1
2 group_2521 EHELCC_02665 516530 517453 1 lsrR transcriptional regulator LsrR Morganella morganii S2
3 group_891 EHELCC_05945 189424 190410 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S2
4 group_2521 NLDBIP_00795 162683 163606 -1 lsrR transcriptional regulator LsrR Morganella morganii S4
5 group_891 NLDBIP_06265 230489 231475 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S4
6 group_2521 LHKJJB_01240 229079 230002 1 lsrR transcriptional regulator LsrR Morganella morganii S3
7 group_891 LHKJJB_03145 208013 208999 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S3
8 group_2521 HKOGLL_01280 234590 235513 1 lsrR transcriptional regulator LsrR Morganella morganii S5
9 group_891 HKOGLL_06620 129877 130863 -1 deoR DNA-binding transcriptional regulator LsrR, DeoR family Morganella morganii S5
10 group_2521 F4V73_RS04565 965357 966307 1 lsrR transcriptional regulator LsrR Morganella psychrotolerans
11 group_891 F4V73_RS09105 1903722 1904708 -1 sugar-binding transcriptional regulator Morganella psychrotolerans
12 group_891 PMI_RS07495 1633552 1634535 -1 sugar-binding transcriptional regulator Proteus mirabilis HI4320