Homologs in group_891

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04655 FBDBKF_04655 88.1 Morganella morganii S1 deoR DNA-binding transcriptional regulator LsrR, DeoR family
EHELCC_05945 EHELCC_05945 88.1 Morganella morganii S2 deoR DNA-binding transcriptional regulator LsrR, DeoR family
NLDBIP_06265 NLDBIP_06265 88.1 Morganella morganii S4 deoR DNA-binding transcriptional regulator LsrR, DeoR family
LHKJJB_03145 LHKJJB_03145 88.1 Morganella morganii S3 deoR DNA-binding transcriptional regulator LsrR, DeoR family
HKOGLL_06620 HKOGLL_06620 88.1 Morganella morganii S5 deoR DNA-binding transcriptional regulator LsrR, DeoR family
PMI_RS07495 PMI_RS07495 57.1 Proteus mirabilis HI4320 - sugar-binding transcriptional regulator

Distribution of the homologs in the orthogroup group_891

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_891

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39356 9.87e-133 384 58 0 317 3 yjhU Uncharacterized transcriptional regulator YjhU Escherichia coli (strain K12)
P39140 9.23e-46 160 33 6 309 1 deoR Deoxyribonucleoside regulator Bacillus subtilis (strain 168)
Q7N2E0 1.46e-29 117 28 10 316 3 lsrR Transcriptional regulator LsrR Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A7ZLX0 1.23e-28 115 26 8 337 3 lsrR Transcriptional regulator LsrR Escherichia coli O139:H28 (strain E24377A / ETEC)
B1IRU8 2.82e-28 114 26 8 337 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A065 2.82e-28 114 26 8 337 3 lsrR Transcriptional regulator LsrR Escherichia coli O9:H4 (strain HS)
Q8XAY6 2.82e-28 114 26 8 337 3 lsrR Transcriptional regulator LsrR Escherichia coli O157:H7
P37078 3.74e-28 114 25 4 311 1 sorC Sorbitol operon regulator Klebsiella pneumoniae
P76141 9e-28 113 25 8 337 1 lsrR Transcriptional regulator LsrR Escherichia coli (strain K12)
B1XEA0 9e-28 113 25 8 337 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain K12 / DH10B)
B1LFA3 9.58e-28 113 26 8 337 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain SMS-3-5 / SECEC)
A6TEB9 1.84e-27 112 26 10 334 3 lsrR Transcriptional regulator LsrR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER5 4.52e-26 108 28 9 321 3 lsrR Transcriptional regulator LsrR Enterobacter sp. (strain 638)
Q57HE3 1.22e-23 102 24 8 324 3 lsrR Transcriptional regulator LsrR Salmonella choleraesuis (strain SC-B67)
Q8ZKQ5 1.5e-23 102 24 7 322 1 lsrR Transcriptional regulator LsrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z2X4 1.56e-23 102 24 7 322 3 lsrR Transcriptional regulator LsrR Salmonella typhi
A9MZF9 1.56e-23 102 24 7 322 3 lsrR Transcriptional regulator LsrR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PJE8 1.56e-23 102 24 7 322 3 lsrR Transcriptional regulator LsrR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q2YIQ4 6.48e-17 83 24 5 310 2 eryD Erythritol catabolism regulatory protein EryD Brucella abortus (strain 2308)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09105
Feature type CDS
Gene -
Product sugar-binding transcriptional regulator
Location 1903722 - 1904708 (strand: -1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_891
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04198 Putative sugar-binding domain
PF13384 Homeodomain-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2390 Transcription (K) K DNA-binding transcriptional regulator LsrR, DeoR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05346 deoxyribonucleoside regulator - -

Protein Sequence

MTAGDNRVFNRLMFGNDPILQAAWLYYQSGLSQTEVADAMGISRVTVVKYLQIARESGVVNISLDMSRYSRIDMALSLKKQFNLTSVLVVPDNPAPDAAADSARRRENMAQAAAVYLSQVIEDGDVLGVAWGRTIHHLAKCLMPKTVHNVTVLQMLGSVPSQPDFTTVESSSLIAGKFGGECAYLHVPAIVSSAELADALRREPIIRANFAQLDRCTKSLFVAGNVTEENPLTRAGVVTTEEMADFRRKGAVGVICGRFYDKDGKPLDTHTDARILGIRLPQLRQIARRIFIATGEQNVAATRGALLGGYVSDLIVDPAIAANLLSGQ

Flanking regions ( +/- flanking 50bp)

ATTGAACATTCGGATGAGTACGATCTCTGGGGCAGTGTGGTGCGCGAAGCATGACAGCCGGTGACAACCGTGTGTTTAACCGGCTGATGTTCGGTAACGATCCCATTTTGCAGGCGGCGTGGCTTTATTATCAGTCTGGTCTGAGCCAGACTGAGGTCGCTGACGCGATGGGGATCTCTCGTGTGACGGTGGTGAAATATCTGCAAATTGCAAGGGAAAGCGGCGTGGTTAATATCAGCCTGGATATGTCGCGCTACAGCCGGATTGACATGGCGTTGTCACTGAAAAAACAGTTTAATCTGACCAGTGTGCTGGTGGTACCGGATAACCCGGCACCGGATGCAGCCGCAGATTCCGCCCGCCGCCGTGAAAATATGGCGCAGGCGGCAGCGGTTTATCTCAGTCAGGTGATTGAGGACGGCGATGTGCTGGGTGTCGCATGGGGGCGGACTATTCACCATCTGGCAAAGTGTCTGATGCCGAAAACCGTGCATAATGTGACGGTATTGCAGATGCTCGGCTCTGTGCCGTCTCAGCCGGATTTCACGACAGTGGAGTCTTCCTCGCTGATTGCCGGTAAATTCGGCGGTGAATGTGCTTACCTTCATGTTCCGGCAATTGTCAGCTCGGCAGAACTGGCGGATGCACTGCGCCGTGAGCCGATTATCCGCGCTAATTTTGCCCAGCTTGATCGCTGCACCAAGTCATTATTTGTCGCGGGCAATGTGACAGAAGAAAACCCGCTTACCCGTGCCGGGGTGGTTACAACGGAAGAAATGGCGGATTTTCGCCGCAAGGGCGCGGTCGGGGTTATCTGCGGACGTTTTTATGATAAAGACGGCAAGCCGCTTGATACCCATACTGATGCCCGCATTCTGGGGATTCGTCTGCCGCAGTTGCGTCAGATTGCGCGGCGGATTTTTATCGCCACCGGTGAACAGAATGTCGCAGCCACGCGCGGGGCATTACTCGGCGGTTATGTGTCAGATTTGATTGTTGATCCCGCGATTGCGGCAAATCTGTTGTCAGGGCAGTAGTCATAATACGCCGCCGTAAGGCGGCTTATCAGAGTGATGACGTGCTTATT