Homologs in group_1037

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05845 FBDBKF_05845 62.4 Morganella morganii S1 ydiK AI-2E family transporter YdiK
EHELCC_11745 EHELCC_11745 62.4 Morganella morganii S2 ydiK AI-2E family transporter YdiK
NLDBIP_12085 NLDBIP_12085 62.4 Morganella morganii S4 ydiK AI-2E family transporter YdiK
LHKJJB_11945 LHKJJB_11945 62.4 Morganella morganii S3 ydiK AI-2E family transporter YdiK
HKOGLL_10560 HKOGLL_10560 62.4 Morganella morganii S5 ydiK AI-2E family transporter YdiK
F4V73_RS03480 F4V73_RS03480 63.8 Morganella psychrotolerans ydiK AI-2E family transporter YdiK

Distribution of the homologs in the orthogroup group_1037

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1037

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFS8 5.58e-141 408 57 2 344 3 ydiK Putative transport protein YdiK Shigella flexneri
P0AFS7 5.58e-141 408 57 2 344 1 ydiK Putative transport protein YdiK Escherichia coli (strain K12)
Q89AW1 3.43e-122 360 47 3 369 3 bbp_117 Putative transport protein bbp_117 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57223 3.51e-102 308 47 2 346 3 BU123 Putative transport protein BU123 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA12 1.63e-94 289 47 2 346 3 BUsg_115 Putative transport protein BUsg_115 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O66948 1.68e-21 97 24 10 318 3 aq_740 Putative transport protein aq_740 Aquifex aeolicus (strain VF5)
O27279 1.29e-13 74 24 7 307 3 MTH_1211 Putative transport protein MTH_1211 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58578 4.73e-09 60 24 9 321 3 MJ1177 Putative transport protein MJ1177 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O58728 7.9e-06 50 24 6 226 3 PH1000 Putative transport protein PH1000 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P9WFM3 0.00036 45 33 3 130 1 Rv1101c Putative transport protein Rv1101c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WFM2 0.00036 45 33 3 130 3 MT1133 Putative transport protein MT1133 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06870
Feature type CDS
Gene ydiK
Product AI-2E family transporter YdiK
Location 1500625 - 1501737 (strand: 1)
Length 1113 (nucleotides) / 370 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1037
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01594 AI-2E family transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0628 General function prediction only (R) R Predicted PurR-regulated permease PerM

Protein Sequence

MEKPQIHTDIPKILFTVLFISFFIIGSFWILNPFIVGFIWAGMIVVATWPLLIILEKRVKYRWLSTMIMMILILLIFVIPIILLISSVIDNSAPLIELAKSPSDIQPPQLLWLKEIPMVGNTLYETWHSILVSGGNALMAKIQPYIGQAANWFFAQALNIGRFALHLVVMLLFSGLLFLQGENVVAWLRHFAVRLAGQRGDAAILLASMSIRAVALGVVLTALIQAVIGGIGLGISGVPYATVLTVLMFICCLAQLGPLFVLVPSILWLFWTGDTTWGIVMIIWGGIVATMDGVLRPFLIKMGADLPMVLILTGVIGGILTLGMIGLFIGPVVLAVAHSLLNAWINEVPKPDPDLTETVEFMNKNFIEKE

Flanking regions ( +/- flanking 50bp)

ATGTTTATTCATCTGCTTTTAGCATTTTATTCGTGTAGGGATTTAAAATCATGGAAAAACCGCAGATCCATACAGATATACCCAAAATTTTATTCACCGTTCTTTTTATTTCTTTTTTTATTATCGGTAGTTTTTGGATCCTGAATCCTTTTATCGTTGGTTTTATTTGGGCTGGCATGATAGTGGTTGCCACTTGGCCTTTACTCATTATTTTAGAAAAACGAGTAAAATATCGCTGGCTATCAACCATGATCATGATGATTTTAATATTACTGATTTTCGTCATTCCGATTATTTTGTTAATTAGTAGTGTTATTGACAACAGTGCTCCATTGATTGAACTAGCAAAATCACCTTCAGATATTCAACCACCACAACTACTATGGTTAAAAGAGATCCCCATGGTTGGTAATACGCTCTATGAAACTTGGCACTCTATTCTCGTTTCTGGTGGTAATGCCTTAATGGCGAAGATCCAACCCTATATTGGACAAGCAGCAAATTGGTTCTTTGCACAAGCCTTAAATATTGGCCGTTTTGCGCTTCACTTAGTTGTCATGTTACTTTTTTCAGGATTACTCTTTTTACAAGGTGAAAATGTTGTTGCTTGGTTACGTCATTTTGCTGTGCGTCTTGCCGGACAACGGGGTGATGCAGCCATTTTATTAGCCTCCATGTCAATTCGCGCAGTGGCGCTGGGTGTGGTGTTAACTGCGCTGATCCAAGCCGTTATTGGTGGTATTGGCTTAGGTATTTCGGGTGTGCCTTATGCCACAGTATTAACGGTATTGATGTTTATTTGCTGCCTTGCGCAATTAGGACCTTTGTTCGTTCTGGTTCCTTCTATTCTATGGCTATTTTGGACCGGTGATACTACATGGGGTATCGTCATGATCATTTGGGGTGGGATTGTGGCGACGATGGATGGTGTACTACGTCCATTCCTCATCAAAATGGGAGCTGACCTACCTATGGTACTGATTTTGACCGGTGTTATCGGTGGTATTTTAACACTCGGTATGATTGGTCTGTTTATTGGCCCTGTTGTATTAGCCGTAGCACACAGTTTATTGAATGCGTGGATCAATGAAGTTCCTAAACCCGATCCAGATTTAACAGAAACTGTAGAATTTATGAATAAAAACTTTATAGAAAAAGAGTAAATAATATAAAAGCATGTAAGTATCAACACTTACATGCTTTATAAGTATTA