Homologs in group_1037

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05845 FBDBKF_05845 100.0 Morganella morganii S1 ydiK AI-2E family transporter YdiK
EHELCC_11745 EHELCC_11745 100.0 Morganella morganii S2 ydiK AI-2E family transporter YdiK
NLDBIP_12085 NLDBIP_12085 100.0 Morganella morganii S4 ydiK AI-2E family transporter YdiK
LHKJJB_11945 LHKJJB_11945 100.0 Morganella morganii S3 ydiK AI-2E family transporter YdiK
F4V73_RS03480 F4V73_RS03480 91.6 Morganella psychrotolerans ydiK AI-2E family transporter YdiK
PMI_RS06870 PMI_RS06870 62.4 Proteus mirabilis HI4320 ydiK AI-2E family transporter YdiK

Distribution of the homologs in the orthogroup group_1037

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1037

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFS8 4.87e-138 400 55 2 351 3 ydiK Putative transport protein YdiK Shigella flexneri
P0AFS7 4.87e-138 400 55 2 351 1 ydiK Putative transport protein YdiK Escherichia coli (strain K12)
Q89AW1 6.56e-120 354 46 1 354 3 bbp_117 Putative transport protein bbp_117 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57223 1.35e-102 310 46 1 353 3 BU123 Putative transport protein BU123 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA12 5.25e-93 285 45 1 346 3 BUsg_115 Putative transport protein BUsg_115 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O66948 9.12e-21 95 26 9 324 3 aq_740 Putative transport protein aq_740 Aquifex aeolicus (strain VF5)
O27279 1.61e-08 59 31 1 129 3 MTH_1211 Putative transport protein MTH_1211 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58578 4.12e-08 57 23 13 334 3 MJ1177 Putative transport protein MJ1177 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O58728 6.41e-06 51 25 4 210 3 PH1000 Putative transport protein PH1000 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P9WFM3 0.000256 46 29 3 141 1 Rv1101c Putative transport protein Rv1101c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WFM2 0.000256 46 29 3 141 3 MT1133 Putative transport protein MT1133 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_10560
Feature type CDS
Gene ydiK
Product AI-2E family transporter YdiK
Location 6984 - 8099 (strand: -1)
Length 1116 (nucleotides) / 371 (amino acids)

Contig

Accession ZDB_688
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1037
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01594 AI-2E family transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0628 General function prediction only (R) R Predicted PurR-regulated permease PerM

Protein Sequence

MEKSQPGYDLPKLIFAVGAISILIVISFWVLSPFLPGFVWAGMIVIATWPVYTAIRRRVRNSRWIAASVMVMLIILLFVFPLALLINSIVENSEPLMRWVKSPGQLTLPELYWLDSIPVIGPKLFASWTTLVASGGNAMMAKIQPYLGQGAAWFLTQLLSAGKFLFHLAIMLLFSALLYLQGEEAMRGFRHFALRLAGMRGDAAVLLAAMSVRAVALGVVVTALTQAIIGGLGLGLAGVPFAAILTVLIFICCVAQLGPLLIMIPSIIYLFWTGDTTWAVVMIVWAGIVATMDGVLRPYLIKMGADLPMVLILTGVIGGMLSLGMIGLFIGPVVLAVSYTLLKAWMNDVPKPSDDLTEVRAYMEEQLSEKE

Flanking regions ( +/- flanking 50bp)

TCCTTTATCGGGAACAACCAGTTAATTCATTTACAAAGGGAAACTTATCCGTGGAAAAATCGCAACCGGGTTATGATTTACCTAAACTAATATTCGCCGTCGGAGCGATATCAATTCTCATTGTCATTAGTTTTTGGGTATTAAGTCCGTTTCTTCCGGGCTTCGTCTGGGCGGGTATGATAGTGATTGCCACCTGGCCGGTTTATACCGCAATCCGCCGCCGTGTCCGTAACAGCCGCTGGATAGCGGCATCTGTGATGGTCATGTTGATTATTCTGCTGTTTGTCTTTCCGCTGGCGCTGCTTATCAACAGTATTGTCGAGAACAGCGAGCCGCTGATGCGCTGGGTCAAATCCCCGGGGCAGCTGACACTGCCGGAGCTCTACTGGCTTGACTCAATCCCGGTTATCGGGCCGAAATTGTTTGCCAGTTGGACAACCCTGGTCGCCAGCGGCGGCAACGCGATGATGGCCAAAATCCAGCCTTACCTCGGACAGGGCGCGGCCTGGTTCCTGACTCAGTTGCTTAGTGCCGGTAAATTCCTGTTCCATCTGGCGATTATGCTGCTGTTCAGTGCTCTGCTCTATCTTCAGGGTGAAGAAGCGATGCGCGGTTTCCGTCACTTTGCTCTGCGCCTCGCCGGCATGCGCGGCGATGCCGCCGTACTGCTGGCAGCGATGTCTGTACGCGCCGTGGCACTGGGTGTGGTGGTCACCGCACTGACTCAGGCAATTATCGGTGGTCTGGGGCTGGGGCTGGCCGGCGTGCCGTTTGCTGCTATCCTGACGGTGCTTATTTTTATCTGCTGTGTGGCGCAACTCGGCCCGCTGCTGATTATGATCCCGTCCATCATTTATCTGTTCTGGACCGGAGATACCACCTGGGCTGTCGTCATGATTGTCTGGGCCGGTATTGTTGCCACCATGGATGGCGTACTGCGCCCGTACCTCATTAAAATGGGGGCGGATTTACCGATGGTACTGATTCTGACCGGCGTTATCGGCGGGATGTTATCGCTCGGAATGATCGGCCTCTTTATCGGCCCTGTCGTGCTGGCGGTCTCCTACACACTGCTGAAGGCGTGGATGAATGATGTGCCGAAGCCGTCAGATGACCTGACCGAGGTTCGCGCTTATATGGAAGAACAACTCTCAGAAAAAGAATAAGTTTTTAATCAGAGGTGCAGAAGTGCACCTCTGATATATTTAATTAATTA