Homologs in group_1004

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05610 FBDBKF_05610 78.4 Morganella morganii S1 pspA phage shock protein PspA
EHELCC_11980 EHELCC_11980 78.4 Morganella morganii S2 pspA phage shock protein PspA
NLDBIP_12320 NLDBIP_12320 78.4 Morganella morganii S4 pspA phage shock protein PspA
LHKJJB_12180 LHKJJB_12180 78.4 Morganella morganii S3 pspA phage shock protein PspA
HKOGLL_10795 HKOGLL_10795 78.4 Morganella morganii S5 pspA phage shock protein PspA
F4V73_RS03695 F4V73_RS03695 78.4 Morganella psychrotolerans pspA phage shock protein PspA

Distribution of the homologs in the orthogroup group_1004

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1004

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFM8 2.75e-108 313 69 0 222 3 pspA Phage shock protein A Shigella flexneri
P0AFM6 2.75e-108 313 69 0 222 1 pspA Phage shock protein A Escherichia coli (strain K12)
P0AFM7 2.75e-108 313 69 0 222 3 pspA Phage shock protein A Escherichia coli O157:H7
B2J6D9 5.11e-32 120 34 0 217 1 vipp1 Membrane-associated protein Vipp1 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Q55707 1.16e-30 116 33 0 217 1 vipp1 Membrane-associated protein Vipp1 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q03943 1.03e-27 110 33 1 210 2 VIPP1 Membrane-associated protein VIPP1, chloroplastic Pisum sativum
Q8S0J7 2.58e-24 101 32 1 208 1 VIPP1 Membrane-associated protein VIPP1, chloroplastic Oryza sativa subsp. japonica
O80796 1.25e-23 99 30 1 210 1 VIPP1 Membrane-associated protein VIPP1, chloroplastic Arabidopsis thaliana
Q9RUB7 2.04e-22 94 29 1 223 1 DR_1473 Phage shock protein A homolog Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
O32201 1.54e-09 59 25 0 177 2 liaH Protein LiaH Bacillus subtilis (strain 168)
P54617 1.99e-08 56 30 1 142 1 ydjF Phage shock protein A homolog Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06645
Feature type CDS
Gene pspA
Product phage shock protein PspA
Location 1453759 - 1454427 (strand: -1)
Length 669 (nucleotides) / 222 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1004
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04012 PspA/IM30 family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1842 Transcription (K)
Signal transduction mechanisms (T)		 KT Phage shock protein A

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03969 phage shock protein A - -

Protein Sequence

MGIFSRFADIINANIASLLDKAEDPEKMIRLMIQEMEDMLVEIRTTSARTLAEKKSLERRIEQAEKQIKDWQDKAELALIKDKEDLARAALIEKQRIASMCDTLKHELIIIDETLDRLKGEISELENKLTETRAKQQSLVVRHQAANSSRQVRRQLDSGKMDAAMARFEQFERRIDHMEGEAQSYGLGKEKSLEQQFAELKADDEISAQLAALKAKINTNKE

Flanking regions ( +/- flanking 50bp)

TTAATCAACACTCAAGGCTATTATTTATCATAGCTATTAAGGATAACATCATGGGTATATTTTCACGTTTTGCTGATATTATTAATGCCAACATCGCTTCTTTGCTGGATAAAGCAGAAGATCCTGAAAAAATGATCCGCTTAATGATCCAAGAAATGGAAGACATGTTAGTTGAGATCAGAACAACTTCTGCACGTACGCTAGCAGAGAAAAAAAGCTTAGAGCGTCGTATTGAGCAAGCAGAAAAACAAATTAAAGATTGGCAAGATAAAGCGGAACTCGCGCTGATTAAAGATAAAGAAGATTTAGCACGTGCGGCGTTAATTGAAAAACAACGTATTGCTTCAATGTGCGATACCTTAAAACATGAACTAATCATCATTGATGAAACATTAGATCGCCTTAAAGGTGAAATCAGTGAATTAGAAAATAAACTGACAGAAACGCGTGCTAAACAGCAATCATTAGTGGTTCGCCACCAAGCTGCAAACTCTTCACGTCAGGTTCGTCGTCAATTAGATAGCGGTAAAATGGATGCGGCAATGGCGCGCTTTGAACAATTTGAGCGTCGAATTGATCATATGGAAGGCGAAGCGCAAAGCTATGGATTAGGTAAAGAAAAATCATTAGAACAACAGTTTGCTGAGCTGAAAGCCGATGATGAAATTAGCGCGCAATTAGCGGCATTAAAAGCTAAAATCAATACTAATAAAGAGTAACAGCAAGCGTAATAACCATCTTATAAAGGATATGTAATGGGCTATATATT