COG1842


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1842, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Phage shock protein A
Function(s) descr. Transcription (K)
Signal transduction mechanisms (T)

Occurence in the database

COG1842 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1004 FBDBKF_05610 129069 129743 -1 pspA phage shock protein PspA Morganella morganii S1
1 group_119 FBDBKF_16805 40232 41608 -1 TIGR03752 family integrating conjugative element protein Morganella morganii S1
2 group_119 EHELCC_10655 172163 173539 1 TIGR03752 family integrating conjugative element protein Morganella morganii S2
3 group_1004 EHELCC_11980 51751 52425 1 pspA phage shock protein PspA Morganella morganii S2
4 group_119 NLDBIP_11000 150434 151810 1 TIGR03752 family integrating conjugative element protein Morganella morganii S4
5 group_1004 NLDBIP_12320 51706 52380 1 pspA phage shock protein PspA Morganella morganii S4
6 group_119 LHKJJB_10355 39718 41094 -1 TIGR03752 family integrating conjugative element protein Morganella morganii S3
7 group_1004 LHKJJB_12180 51751 52425 1 pspA phage shock protein PspA Morganella morganii S3
8 group_1004 HKOGLL_10795 51751 52425 1 pspA phage shock protein PspA Morganella morganii S5
9 group_119 HKOGLL_16520 39727 41103 -1 TIGR03752 family integrating conjugative element protein Morganella morganii S5
10 group_1004 F4V73_RS03695 785312 785986 1 pspA phage shock protein PspA Morganella psychrotolerans
11 group_1004 PMI_RS06645 1453759 1454427 -1 pspA phage shock protein PspA Proteus mirabilis HI4320