Homologs in group_1563

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10135 FBDBKF_10135 71.9 Morganella morganii S1 mnmH tRNA 2-selenouridine(34) synthase MnmH
EHELCC_04935 EHELCC_04935 71.9 Morganella morganii S2 mnmH tRNA 2-selenouridine(34) synthase MnmH
NLDBIP_04935 NLDBIP_04935 71.9 Morganella morganii S4 mnmH tRNA 2-selenouridine(34) synthase MnmH
LHKJJB_13695 LHKJJB_13695 71.9 Morganella morganii S3 mnmH tRNA 2-selenouridine(34) synthase MnmH
HKOGLL_12840 HKOGLL_12840 71.9 Morganella morganii S5 mnmH tRNA 2-selenouridine(34) synthase MnmH
F4V73_RS00205 F4V73_RS00205 71.1 Morganella psychrotolerans mnmH tRNA 2-selenouridine(34) synthase MnmH

Distribution of the homologs in the orthogroup group_1563

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1563

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4F2U3 0.0 757 100 0 362 3 selU tRNA 2-selenouridine synthase Proteus mirabilis (strain HI4320)
B5BD19 1.99e-172 487 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella paratyphi A (strain AKU_12601)
Q5PCH1 1.99e-172 487 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5QUA2 2.01e-172 487 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella enteritidis PT4 (strain P125109)
B5R637 3.3e-172 486 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella gallinarum (strain 287/91 / NCTC 13346)
Q8ZR88 5.89e-172 486 63 1 361 1 selU tRNA 2-selenouridine synthase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9S4Y8 1.01e-171 485 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella enteritidis
C0PVG5 1.27e-171 485 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella paratyphi C (strain RKS4594)
B4SXL9 1.27e-171 485 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella newport (strain SL254)
Q57S51 1.27e-171 485 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella choleraesuis (strain SC-B67)
A9MW55 1.49e-171 484 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B5FLM4 2.21e-171 484 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella dublin (strain CT_02021853)
B5EYB4 2.88e-171 484 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella agona (strain SL483)
Q8Z8R4 4.55e-171 483 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella typhi
A9MLB3 5.87e-171 483 64 1 353 3 selU tRNA 2-selenouridine synthase Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B4T9K6 2.18e-170 482 63 1 361 3 selU tRNA 2-selenouridine synthase Salmonella heidelberg (strain SL476)
Q3Z4Q0 3.97e-170 481 62 1 361 3 selU tRNA 2-selenouridine synthase Shigella sonnei (strain Ss046)
B7L7D0 4.89e-170 481 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain 55989 / EAEC)
Q324Z4 5.22e-170 481 62 1 361 3 selU tRNA 2-selenouridine synthase Shigella boydii serotype 4 (strain Sb227)
B2TTA2 5.22e-170 481 62 1 361 3 selU tRNA 2-selenouridine synthase Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B7LJH5 6.29e-170 481 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B1IZ97 7.02e-170 480 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A7ZXF7 7.02e-170 480 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O9:H4 (strain HS)
B6I0F4 8e-170 480 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain SE11)
B7M4K7 9.43e-170 480 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O8 (strain IAI1)
B4TMJ2 9.88e-170 480 63 1 353 3 selU tRNA 2-selenouridine synthase Salmonella schwarzengrund (strain CVM19633)
Q0T790 1.43e-169 479 62 1 361 3 selU tRNA 2-selenouridine synthase Shigella flexneri serotype 5b (strain 8401)
B7N958 1.63e-169 479 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7MQL5 3.32e-169 479 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O81 (strain ED1a)
Q83SD5 4.56e-169 478 62 1 361 3 selU tRNA 2-selenouridine synthase Shigella flexneri
B5YPM0 5.99e-169 478 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XCZ2 5.99e-169 478 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O157:H7
B1LKC2 6.33e-169 478 61 1 363 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain SMS-3-5 / SECEC)
A7ZIR0 6.33e-169 478 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O139:H28 (strain E24377A / ETEC)
Q32J96 6.47e-169 478 62 1 361 3 selU tRNA 2-selenouridine synthase Shigella dysenteriae serotype 1 (strain Sd197)
Q0TKD8 1.57e-168 477 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P33667 4.11e-168 476 62 1 361 1 selU tRNA 2-selenouridine synthase Escherichia coli (strain K12)
B1XFT8 4.11e-168 476 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain K12 / DH10B)
C4ZUV3 4.11e-168 476 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain K12 / MC4100 / BW2952)
Q1RF31 7.66e-168 475 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli (strain UTI89 / UPEC)
A1A8G9 7.66e-168 475 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O1:K1 / APEC
B7ME26 7.66e-168 475 62 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UKI1 9.13e-168 475 61 1 361 3 selU tRNA 2-selenouridine synthase Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8FK67 5.53e-166 470 62 1 354 3 selU tRNA 2-selenouridine synthase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A7MJZ3 1.67e-143 414 61 3 356 3 selU tRNA 2-selenouridine synthase Cronobacter sakazakii (strain ATCC BAA-894)
A8GFD0 6.63e-143 412 54 1 358 3 selU tRNA 2-selenouridine synthase Serratia proteamaculans (strain 568)
Q6LP06 1.72e-137 398 52 1 353 3 selU tRNA 2-selenouridine synthase Photobacterium profundum (strain SS9)
A1S1Z4 2.04e-116 345 45 2 361 3 selU tRNA 2-selenouridine synthase Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
A8GYV2 1.93e-114 340 43 2 362 3 selU tRNA 2-selenouridine synthase Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
B0TMW0 9.98e-114 338 43 2 362 3 selU tRNA 2-selenouridine synthase Shewanella halifaxensis (strain HAW-EB4)
A1SRN6 1.61e-113 337 45 2 360 3 selU tRNA 2-selenouridine synthase Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q488J6 3.77e-113 337 47 2 347 3 selU tRNA 2-selenouridine synthase Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
B8CH52 9.7e-113 335 44 2 359 3 selU tRNA 2-selenouridine synthase Shewanella piezotolerans (strain WP3 / JCM 13877)
A3Q958 1.21e-112 335 43 2 361 3 selU tRNA 2-selenouridine synthase Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Q089T3 2.51e-111 332 42 2 364 3 selU tRNA 2-selenouridine synthase Shewanella frigidimarina (strain NCIMB 400)
A1RP95 2.78e-110 329 43 2 361 3 selU tRNA 2-selenouridine synthase Shewanella sp. (strain W3-18-1)
A4YBC0 2.78e-110 329 43 2 361 3 selU tRNA 2-selenouridine synthase Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A8G1H1 1.52e-109 327 44 3 361 3 selU tRNA 2-selenouridine synthase Shewanella sediminis (strain HAW-EB3)
A6WHQ4 1.3e-107 322 42 2 362 3 selU tRNA 2-selenouridine synthase Shewanella baltica (strain OS185)
B1KN07 2.87e-107 322 43 2 346 3 selU tRNA 2-selenouridine synthase Shewanella woodyi (strain ATCC 51908 / MS32)
A1U6R9 1.09e-106 320 43 2 360 3 selU tRNA 2-selenouridine synthase Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)
A3DA85 1.78e-106 320 42 2 362 3 selU tRNA 2-selenouridine synthase Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8EBN0 2.29e-106 319 42 2 362 3 selU tRNA 2-selenouridine synthase Shewanella baltica (strain OS223)
A9KW78 5.29e-106 318 42 2 362 3 selU tRNA 2-selenouridine synthase Shewanella baltica (strain OS195)
Q889F6 1.83e-105 317 44 2 357 3 selU tRNA 2-selenouridine synthase Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
A9I3Z9 3e-105 317 44 3 356 3 selU tRNA 2-selenouridine synthase Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
Q12SQ2 4.7e-105 316 43 2 349 3 selU tRNA 2-selenouridine synthase Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
A6V7E9 6.23e-105 316 46 3 353 3 selU tRNA 2-selenouridine synthase Pseudomonas aeruginosa (strain PA7)
Q4ZYK5 1.83e-104 314 44 2 352 3 selU tRNA 2-selenouridine synthase Pseudomonas syringae pv. syringae (strain B728a)
B7UV78 2.5e-104 314 45 3 353 3 selU tRNA 2-selenouridine synthase Pseudomonas aeruginosa (strain LESB58)
Q9I382 6.44e-104 313 45 3 353 3 selU tRNA 2-selenouridine synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02KC8 6.44e-104 313 45 3 353 3 selU tRNA 2-selenouridine synthase Pseudomonas aeruginosa (strain UCBPP-PA14)
Q8EKA0 7.72e-104 313 42 4 366 3 selU tRNA 2-selenouridine synthase Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q0HNW2 1.55e-103 313 42 3 362 3 selU tRNA 2-selenouridine synthase Shewanella sp. (strain MR-4)
Q0I0D0 1.77e-103 312 42 3 362 3 selU tRNA 2-selenouridine synthase Shewanella sp. (strain MR-7)
Q48NL9 2.2e-103 311 43 2 352 3 selU tRNA 2-selenouridine synthase Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q1IEL0 2.37e-103 311 43 2 353 3 selU tRNA 2-selenouridine synthase Pseudomonas entomophila (strain L48)
A0KRK0 4.1e-103 311 42 2 360 3 selU tRNA 2-selenouridine synthase Shewanella sp. (strain ANA-3)
B1JDU1 7.61e-103 310 44 3 354 3 selU tRNA 2-selenouridine synthase Pseudomonas putida (strain W619)
Q2SQB9 3.84e-102 309 44 3 352 3 selU tRNA 2-selenouridine synthase Hahella chejuensis (strain KCTC 2396)
Q3K9R2 7.2e-101 305 43 4 359 3 selU tRNA 2-selenouridine synthase Pseudomonas fluorescens (strain Pf0-1)
Q0KEU1 9.35e-101 305 42 2 356 3 selU tRNA 2-selenouridine synthase Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
C1DNN5 1.54e-100 305 44 3 347 3 selU tRNA 2-selenouridine synthase Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
B0KPF4 2.3e-100 304 43 3 354 3 selU tRNA 2-selenouridine synthase Pseudomonas putida (strain GB-1)
A5VYQ1 4.45e-100 303 43 3 354 3 selU tRNA 2-selenouridine synthase Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
Q88PM7 6.24e-100 303 43 3 354 3 selU tRNA 2-selenouridine synthase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q4KEE7 1.24e-99 302 43 3 353 3 selU tRNA 2-selenouridine synthase Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q476K0 1.41e-99 302 42 3 354 3 selU tRNA 2-selenouridine synthase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
B2AGP0 8.63e-98 297 43 2 356 3 selU tRNA 2-selenouridine synthase Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1)
A0KKE6 3.47e-97 296 41 2 364 3 selU tRNA 2-selenouridine synthase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q7WE96 1.18e-96 295 43 3 355 3 selU tRNA 2-selenouridine synthase Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
A4XV44 1.32e-95 292 44 3 354 3 selU tRNA 2-selenouridine synthase Pseudomonas mendocina (strain ymp)
A4SMM2 4.08e-95 291 41 3 355 3 selU tRNA 2-selenouridine synthase Aeromonas salmonicida (strain A449)
A6QBB6 1.09e-93 287 41 5 367 3 selU tRNA 2-selenouridine synthase Sulfurovum sp. (strain NBC37-1)
A1WIC3 1.65e-92 284 41 3 354 3 selU tRNA 2-selenouridine synthase Verminephrobacter eiseniae (strain EF01-2)
Q1R084 3.55e-90 278 44 4 338 3 selU tRNA 2-selenouridine synthase Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
Q30RE2 4.43e-88 272 40 4 358 3 selU tRNA 2-selenouridine synthase Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)
Q0VNT0 1.65e-86 268 42 2 349 3 selU tRNA 2-selenouridine synthase Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2)
Q31GV5 4.02e-86 267 38 3 363 3 selU tRNA 2-selenouridine synthase Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2)
Q82WE9 6.42e-73 234 34 6 379 3 selU tRNA 2-selenouridine synthase Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
Q6MK43 2.1e-72 233 36 8 371 3 selU tRNA 2-selenouridine synthase Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)
Q0AFI5 2.47e-70 228 35 6 371 3 selU tRNA 2-selenouridine synthase Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)
Q60359 8.8e-18 84 33 2 133 4 MJ0052 Uncharacterized protein MJ0052 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06095
Feature type CDS
Gene mnmH
Product tRNA 2-selenouridine(34) synthase MnmH
Location 1336739 - 1337827 (strand: -1)
Length 1089 (nucleotides) / 362 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1563
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2603 Translation, ribosomal structure and biogenesis (J) J tRNA 2-selenouridine synthase SelU, contains rhodanese domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06917 tRNA 2-selenouridine synthase [EC:2.9.1.3] - -

Protein Sequence

MESTLSAQNIRRLLANETPIIDVRAPIEFNQGAMPNAINLPLMNNEERAAVGTCYKQHGSQKAVELGHQLVKGEIKAHRVAAWREACERFPSGFICCARGGMRSHIVQKWLAEIGIDYPLIEGGYKALRQATIEMTNELVQRPIILIGGCTGNGKTTLVRSLPEGIDLEGFAHHRGSSFGRTVEAQFAQATFENYLAVDMLKKSSYHSRWVLEDEGRAIGANGLPESLRIQMATAHLVVVDDPFERRMARLKEEYFDRMTHDFIEAYGEEKGWQEYSDYLHHGLYAIRRRLGAQRAAELTQLLDNALAAQKISANTEVHFSWLSPLLKEYYDPMYRYQLSKKQDKIIYTGSYEEVEQWFANH

Flanking regions ( +/- flanking 50bp)

AGAGTATAGTAGACAATCTTTCTGCCTGTTTAGATATTATAGTTTTTATTATGGAATCAACGCTTTCTGCTCAAAATATACGCCGACTCCTTGCCAATGAAACACCGATTATTGATGTTCGTGCGCCAATAGAATTCAATCAAGGAGCGATGCCCAACGCAATAAATCTACCTTTAATGAATAATGAAGAGCGTGCGGCTGTAGGGACTTGCTACAAACAACATGGCTCTCAAAAAGCGGTAGAGTTGGGGCATCAATTAGTTAAAGGCGAGATAAAAGCACATCGTGTTGCTGCTTGGCGCGAGGCTTGCGAGCGTTTTCCTTCCGGATTTATTTGCTGTGCTCGTGGCGGTATGCGTTCACACATTGTTCAAAAATGGTTAGCTGAAATAGGCATCGATTATCCTTTAATTGAAGGTGGATATAAAGCGTTAAGACAAGCGACGATCGAAATGACCAATGAGCTAGTACAACGCCCTATTATCTTAATTGGTGGTTGTACAGGTAATGGTAAAACAACCTTAGTACGCTCTTTACCAGAGGGAATTGATTTAGAAGGATTCGCTCATCATCGAGGCTCCTCATTTGGTCGCACTGTTGAGGCTCAGTTTGCTCAAGCGACTTTCGAAAACTACCTTGCTGTCGATATGTTAAAAAAATCCTCCTATCATTCCCGCTGGGTACTCGAAGACGAAGGCCGTGCTATTGGTGCTAATGGTTTACCGGAAAGTTTGCGTATACAAATGGCAACAGCCCATTTGGTTGTGGTGGATGATCCATTTGAGCGGCGTATGGCAAGACTCAAAGAAGAATATTTTGATCGTATGACTCATGACTTTATTGAAGCGTATGGTGAAGAAAAAGGTTGGCAAGAATACAGTGATTATTTGCATCATGGATTGTATGCTATTCGACGTCGATTAGGTGCTCAAAGAGCCGCGGAGTTAACCCAATTACTTGATAATGCTTTAGCCGCACAAAAAATAAGTGCGAATACAGAAGTGCATTTTTCATGGTTATCGCCTTTACTAAAAGAATATTACGATCCTATGTATCGTTACCAGTTAAGTAAAAAACAAGATAAAATTATCTATACGGGTAGCTATGAAGAAGTTGAACAATGGTTTGCTAACCATTAATTCCCACGCAAGAAAATAGGATAAAAAATAAATCGAATTTTAGTATATAT