Homologs in group_3889

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS14520 PMI_RS14520 35.3 Proteus mirabilis HI4320 - tripartite tricarboxylate transporter substrate binding protein

Distribution of the homologs in the orthogroup group_3889

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3889

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O30446 7.25e-09 56 24 0 139 3 BP0148 UPF0065 protein BP0148 Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P27103 3.47e-08 54 26 1 111 3 None UPF0065 protein in tcbD-tcbE intergenic region Pseudomonas sp. (strain P51)
P70791 1.03e-07 53 29 0 95 3 None UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region Agrobacterium vitis
Q45389 1.36e-07 52 23 0 140 3 bugT Protein BugT Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
O34439 3.07e-06 48 23 2 151 3 yflP UPF0065 protein YflP Bacillus subtilis (strain 168)
Q44018 0.000412 42 31 2 136 3 None UPF0065 protein in gbd 5'region Cupriavidus necator

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05925
Feature type CDS
Gene -
Product tripartite tricarboxylate transporter substrate-binding protein
Location 1302202 - 1302654 (strand: 1)
Length 453 (nucleotides) / 150 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3889
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF03401 Tripartite tricarboxylate transporter family receptor

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3181 Energy production and conversion (C) C Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07795 putative tricarboxylic transport membrane protein Two-component system -

Protein Sequence

MLRAAGLPDNAIRFIPSQGASAALQELASGGVDIVTSSLGEADSMVKAGLVKHMAIMSNEKSAFYPDVPLFKEATGYDWDLQAWNMLVAPKGLDKEAQDKLTAAMKKVYASGELAEFANKQGFEVIELYGDDATQFMANEDKKFGEIIKK

Flanking regions ( +/- flanking 50bp)

GAGCTTGTTCCATTTTATTACCCGCTCACTGGCATCTTAATAATATTGGCATGTTACGTGCAGCAGGTTTACCTGATAACGCAATCCGCTTTATTCCTTCCCAAGGAGCCAGTGCGGCATTACAAGAGTTAGCTTCAGGGGGCGTTGATATTGTAACGTCTTCATTAGGTGAGGCTGACAGTATGGTCAAAGCCGGATTAGTCAAACATATGGCCATTATGTCTAATGAAAAATCGGCATTTTATCCTGATGTTCCTCTCTTTAAAGAAGCAACAGGTTATGATTGGGATTTACAAGCATGGAATATGTTAGTTGCCCCTAAAGGACTTGATAAAGAAGCACAAGATAAGCTTACCGCAGCAATGAAGAAAGTTTATGCTTCAGGTGAATTAGCTGAATTTGCTAATAAACAAGGATTTGAAGTCATTGAATTGTATGGTGATGATGCGACACAATTTATGGCCAATGAAGATAAAAAGTTTGGCGAAATTATAAAAAAATAACTGAGGAAACGGCTGATAATAGCCGTTTTTATGCCTATGCTAAATCGTCA