Orthogroup:group_3889



Homologs in group_3889

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS05925 PMI_RS05925 Proteus mirabilis HI4320 - tripartite tricarboxylate transporter substrate-binding protein
PMI_RS14520 PMI_RS14520 Proteus mirabilis HI4320 - tripartite tricarboxylate transporter substrate binding protein

Distribution of group_3889 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of the RefSeq best hits of group_3889

Orthogroup content: 2 members

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This page summarizes the annotation of all members of the orthologous group group_3889.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 2

Product

# Product Occurence
1 tripartite tricarboxylate transporter substrate-binding protein 1
2 tripartite tricarboxylate transporter substrate binding protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3181 2 C Energy production and conversion (C) Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07795 2 putative tricarboxylic transport membrane protein Two-component system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03401 2 Tripartite tricarboxylate transporter family receptor

Annotations of the 10 SwissProt hits

Annotation Number of occurrences
Protein BugT 1
UPF0065 protein BB4329 1
UPF0065 protein BP0148 1
UPF0065 protein YflP 1
UPF0065 protein in clcB-clcD intergenic region 2
UPF0065 protein in clcB-clcD intergenic region (Fragment) 1
UPF0065 protein in gbd 5'region 1
UPF0065 protein in tcbD-tcbE intergenic region 1
UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region 1

Protein length

Min length 150
Max length 324
Mean length (sd) 237.0 (123.0)
Median length 237.0

Protein length distribution