Homologs in group_3889
1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.
| Locus tag | Identity | Source | Gene | Product | |
|---|---|---|---|---|---|
| PMI_RS05925 | PMI_RS05925 | 35.3 | Proteus mirabilis HI4320 | - | tripartite tricarboxylate transporter substrate-binding protein |
Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).
| Swissprot accession | Eval | Score | ID (%) | N gaps | Alignment length | Annot score | Gene | Description | Organism |
|---|---|---|---|---|---|---|---|---|---|
| Q44018 | 4.33e-33 | 127 | 31 | 7 | 308 | 3 | None | UPF0065 protein in gbd 5'region | Cupriavidus necator |
| P27103 | 6.17e-32 | 124 | 28 | 7 | 325 | 3 | None | UPF0065 protein in tcbD-tcbE intergenic region | Pseudomonas sp. (strain P51) |
| P0A177 | 3.61e-30 | 120 | 29 | 7 | 302 | 3 | None | UPF0065 protein in clcB-clcD intergenic region | Pseudomonas putida |
| O30446 | 4.79e-28 | 114 | 29 | 7 | 310 | 3 | BP0148 | UPF0065 protein BP0148 | Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) |
| B3EWP1 | 1.03e-24 | 104 | 32 | 5 | 231 | 1 | None | UPF0065 protein in clcB-clcD intergenic region | Pseudomonas aeruginosa |
| P70791 | 1.58e-22 | 99 | 27 | 6 | 297 | 3 | None | UPF0065 protein in the TAR-I ttuE-ttuC' intergenic region | Agrobacterium vitis |
| Q45389 | 2.34e-22 | 98 | 27 | 7 | 308 | 3 | bugT | Protein BugT | Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) |
| O06702 | 6.12e-18 | 86 | 25 | 7 | 301 | 3 | BB4329 | UPF0065 protein BB4329 | Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) |
| O34439 | 3.53e-09 | 60 | 21 | 7 | 301 | 3 | yflP | UPF0065 protein YflP | Bacillus subtilis (strain 168) |
| P0A178 | 2.95e-06 | 50 | 27 | 2 | 135 | 3 | None | UPF0065 protein in clcB-clcD intergenic region (Fragment) | Pseudomonas knackmussii (strain DSM 6978 / CCUG 54928 / LMG 23759 / B13) |
| Source | Proteus mirabilis HI4320 |
|---|---|
| Locus tag | PMI_RS14520 |
| Feature type | CDS |
| Gene | - |
| Product | tripartite tricarboxylate transporter substrate binding protein |
| Location | 3219305 - 3220279 (strand: -1) |
| Length | 975 (nucleotides) / 324 (amino acids) |
| Accession | NC_010554 |
|---|---|
| Length | 4063606 nucleotides |
| Topology | circular |
| Plasmid | False |
| Orthogroup | group_3889 | |
|---|---|---|
| Orthogroup size | 2 | |
| N. genomes | 1 |
| PF03401 | Tripartite tricarboxylate transporter family receptor |
|---|
| ID | Function(s) descr. | Function(s) cat. | Description |
|---|---|---|---|
| COG3181 | Energy production and conversion (C) | C | Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC |
| KO | Description | Pathways | Modules |
|---|---|---|---|
| K07795 | putative tricarboxylic transport membrane protein | Two-component system | - |
MKKSLLAALALTMTLGMGNAVAQQLTYPTKNIDVVIPKNPGGGTDTSARTIIEFAKDVMPAGRIFVPVNKPAGNGLTGLIEVANARPDGTKLVMTTVELAMFPHQGKSPVTYKDFTPIATTIADPVVLVVNANSPYKTLEEFIAGAKANPGKLKIGNSGMGAIYHLAGVNIERTTGTKFNHIPYNEGTGPSIAALVGDHIDGVLTTPGAVKSQVDAGILRVLGVMDERRFPLIPDVPTFKEALNLDTNVKMRAWAVLATTAGVPDNVKNELVGAFSEVVQKPEYQEALKKQGIMPVFIVGDDAYQMMKEDHEMYAELISATLKK
GTTTATCAGCAGTTAATAGCTACTCAATAAAAATGTGGAGAAAGGGTTTTATGAAAAAGAGTCTACTCGCAGCGTTGGCGCTTACGATGACATTGGGCATGGGGAATGCTGTAGCCCAACAGTTAACGTATCCTACTAAAAATATTGATGTGGTTATCCCAAAAAACCCGGGGGGAGGTACTGATACTTCTGCACGGACTATCATTGAATTTGCTAAAGATGTGATGCCAGCAGGGCGTATCTTTGTACCGGTTAATAAACCCGCAGGTAATGGTTTAACTGGGTTAATTGAAGTGGCAAATGCGCGTCCTGATGGCACTAAATTAGTCATGACGACGGTTGAATTAGCGATGTTCCCACATCAAGGTAAGTCACCCGTGACCTATAAAGACTTTACCCCGATTGCGACAACGATTGCTGATCCGGTTGTGCTCGTGGTGAATGCTAATTCACCTTATAAAACATTGGAAGAATTTATTGCCGGAGCAAAAGCGAACCCTGGTAAATTAAAAATTGGTAACTCAGGTATGGGAGCTATTTATCACCTCGCGGGGGTGAATATCGAACGTACTACGGGAACTAAGTTTAATCATATTCCTTATAACGAAGGTACAGGCCCCTCTATTGCTGCATTAGTGGGCGATCATATCGATGGCGTATTAACCACACCCGGTGCGGTTAAATCACAAGTTGATGCGGGTATCTTGCGTGTTCTCGGTGTGATGGATGAACGTCGTTTCCCACTTATTCCGGATGTTCCAACCTTTAAAGAAGCCTTAAATCTCGATACCAACGTGAAAATGCGCGCATGGGCTGTATTAGCCACAACAGCAGGTGTGCCTGATAACGTTAAAAATGAGTTAGTGGGGGCATTTTCAGAAGTGGTTCAAAAACCAGAATATCAAGAAGCATTGAAAAAACAAGGTATTATGCCAGTATTTATCGTCGGTGACGATGCGTATCAAATGATGAAAGAAGATCATGAGATGTATGCTGAATTAATCTCAGCCACCCTGAAAAAATAACCTTTCTATAATAAACCACCCTATCCGCAAGTCGGATAGGGTCGGGGAGA
