Homologs in group_613

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01935 FBDBKF_01935 59.3 Morganella morganii S1 sirB1 invasion regulator SirB1
EHELCC_02405 EHELCC_02405 59.3 Morganella morganii S2 sirB1 invasion regulator SirB1
NLDBIP_01055 NLDBIP_01055 59.3 Morganella morganii S4 sirB1 invasion regulator SirB1
LHKJJB_00980 LHKJJB_00980 59.3 Morganella morganii S3 sirB1 invasion regulator SirB1
HKOGLL_01020 HKOGLL_01020 59.3 Morganella morganii S5 sirB1 invasion regulator SirB1
F4V73_RS04280 F4V73_RS04280 59.0 Morganella psychrotolerans sirB1 invasion regulator SirB1

Distribution of the homologs in the orthogroup group_613

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_613

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGM5 1.35e-112 328 57 0 269 3 ychA UPF0162 protein YchA Escherichia coli (strain K12)
P0AGM6 1.35e-112 328 57 0 269 3 ychA UPF0162 protein YchA Escherichia coli O157:H7
P57270 1.09e-111 325 57 0 269 3 BU173 UPF0162 protein BU173 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0A2L9 1.15e-111 325 58 0 269 3 sirB1 Protein SirB1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2M0 1.15e-111 325 58 0 269 3 sirB1 Protein SirB1 Salmonella typhi
Q8K9W8 2.57e-98 291 54 0 269 3 BUsg_167 UPF0162 protein BUsg_167 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AS9 3.77e-96 286 53 0 262 3 bbp_163 UPF0162 protein bbp_163 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9KQ28 5.13e-65 207 38 1 268 3 VC_2176 UPF0162 protein VC_2176 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9CN81 6.09e-59 191 40 1 233 3 PM0557 UPF0162 protein PM0557 Pasteurella multocida (strain Pm70)
P45252 3.7e-42 148 34 1 222 3 HI_1558 UPF0162 protein HI_1558 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q87DH6 4.4e-18 85 22 3 261 3 PD_0709 UPF0162 protein PD_0709 Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PD85 5.9e-18 84 23 4 274 3 XF_1494 UPF0162 protein XF_1494 Xylella fastidiosa (strain 9a5c)
Q9HYI6 1.86e-09 60 25 3 210 3 PA3419 UPF0162 protein PA3419 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5R5S1 7.61e-05 47 31 0 70 2 FBXO21 F-box only protein 21 Pongo abelii
O94952 7.98e-05 47 31 0 70 1 FBXO21 F-box only protein 21 Homo sapiens
Q8VDH1 8.73e-05 47 30 0 70 1 Fbxo21 F-box only protein 21 Mus musculus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05275
Feature type CDS
Gene sirB1
Product invasion regulator SirB1
Location 1152454 - 1153269 (strand: 1)
Length 816 (nucleotides) / 271 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_613
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13369 Transglutaminase-like superfamily
PF13371 Tetratricopeptide repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2912 Signal transduction mechanisms (T) T Regulator of sirC expression, contains transglutaminase-like and TPR domains

Protein Sequence

MMIETIADYEFNKAPLVKGMILISQAIRPDFPVTSVGYQLAQLVEQAEAEIPHQASIQERIDALLKLFYKQWHFSGASGKYCLSDTLWLDKVLATHIGSPVSLGSILIYIAQAINLPLAPVIFPTQLIIRIDIPNEKPLFLNPINGEYLSRHTLDVWLKGNVGSTSELSASDLEESEHSSIIRKLLDTLKVSLMEEKKMEQALKTSETVLLFDPEDPYEIRDRGLIYAQLECNHVALSDLNYFVEQCPEDPISEMIKIQIHSIEQHPVVLH

Flanking regions ( +/- flanking 50bp)

AACTTTCCGTGATTACGGCGGTAATGAGCGAGTGACAGTAGGTCGTTGGAATGATGATAGAAACCATAGCTGATTACGAATTTAACAAAGCCCCTTTGGTTAAGGGTATGATCCTTATCTCTCAGGCAATTCGCCCAGATTTTCCAGTCACTTCAGTTGGCTATCAATTGGCACAGCTGGTGGAGCAAGCAGAAGCGGAAATTCCCCACCAAGCCAGTATACAAGAGAGAATTGATGCACTGCTGAAGCTATTTTATAAACAATGGCATTTCAGTGGTGCAAGTGGCAAATATTGTCTTTCTGATACGTTATGGTTAGATAAAGTATTGGCCACTCATATTGGTTCACCTGTGTCATTAGGTTCCATTTTAATTTATATCGCACAGGCAATAAATTTACCGTTAGCGCCAGTTATTTTTCCTACACAGTTAATTATCAGAATAGATATTCCGAATGAAAAACCACTTTTCTTAAATCCCATTAATGGTGAATATCTTTCTCGCCATACTTTAGACGTTTGGCTAAAAGGTAATGTAGGCAGTACATCTGAGCTATCAGCATCCGATCTAGAAGAGTCAGAACACAGTTCTATTATTCGCAAGTTATTAGATACACTCAAAGTCTCTTTAATGGAAGAAAAGAAGATGGAGCAGGCACTTAAGACCAGTGAAACGGTATTATTGTTTGATCCAGAAGATCCCTATGAAATACGTGATCGTGGGCTGATTTATGCTCAATTAGAGTGTAATCATGTGGCATTGTCTGACCTTAACTACTTTGTTGAACAGTGTCCGGAAGATCCCATTTCAGAGATGATTAAAATTCAAATTCATTCAATAGAACAGCATCCTGTTGTTTTACATTAAAATTTAATCCCGTACTGGGTATATAACGGTACATGGCAAAATAAGATAGG