Homologs in group_293

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07305 FBDBKF_07305 31.5 Morganella morganii S1 pqiA membrane integrity-associated transporter subunit PqiA
EHELCC_03665 EHELCC_03665 31.5 Morganella morganii S2 pqiA membrane integrity-associated transporter subunit PqiA
NLDBIP_03665 NLDBIP_03665 31.5 Morganella morganii S4 pqiA membrane integrity-associated transporter subunit PqiA
LHKJJB_09495 LHKJJB_09495 31.5 Morganella morganii S3 pqiA membrane integrity-associated transporter subunit PqiA
HKOGLL_09480 HKOGLL_09480 31.5 Morganella morganii S5 pqiA membrane integrity-associated transporter subunit PqiA
F4V73_RS01490 F4V73_RS01490 30.6 Morganella psychrotolerans pqiA membrane integrity-associated transporter subunit PqiA
PMI_RS03815 PMI_RS03815 29.8 Proteus mirabilis HI4320 pqiA membrane integrity-associated transporter subunit PqiA

Distribution of the homologs in the orthogroup group_293

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_293

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD03 4.24e-149 432 56 4 398 1 yebS Intermembrane transport protein YebS Escherichia coli (strain K12)
P0AD03 7.67e-09 60 25 6 204 1 yebS Intermembrane transport protein YebS Escherichia coli (strain K12)
P0AD04 4.24e-149 432 56 4 398 3 yebS Intermembrane transport protein YebS Escherichia coli O157:H7
P0AD04 7.67e-09 60 25 6 204 3 yebS Intermembrane transport protein YebS Escherichia coli O157:H7
P44287 5.54e-111 335 42 3 413 3 HI_1671 Uncharacterized protein HI_1671 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AFM1 3.04e-46 167 30 8 416 3 pqiA Intermembrane transport protein PqiA Shigella flexneri
P0AFL9 3.04e-46 167 30 8 416 1 pqiA Intermembrane transport protein PqiA Escherichia coli (strain K12)
P0AFM0 3.04e-46 167 30 8 416 3 pqiA Intermembrane transport protein PqiA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04920
Feature type CDS
Gene -
Product membrane integrity lipid transport subunit YebS
Location 1075696 - 1076952 (strand: -1)
Length 1257 (nucleotides) / 418 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_293
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF04403 Paraquat-inducible protein A

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2995 Cell wall/membrane/envelope biogenesis (M) M Intermembrane transporter PqiABC subunit PqiA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03808 paraquat-inducible protein A - -

Protein Sequence

MSDLVTKESKSIHCQECDHLVSLPIDLKRGEDAYCPQCQAKLATYRDWSLTRLLILSITMLIFASIAFTQPLIKIHLLGTMISANVLDGIRLMSQQGSPLTATMVAFCAVAAPLSLPIAILYLHLGARLHLNLRPVLLMLGKLKEWVMLDVYLIGLGVATIKLGDYATIYIGHGLVAFSALMVLSLLMLININMDQLWQQFYPQKEIKTSPATCHACHYHFKKPPSSHCPRCKSCYSARQPMSLQKTWAALITAMLLLLPANLLPISIFYLNGQRNEDTIFSGVLSLINSGNTPIAIIVFIASIFVPFFKIIIMLGLLLSIHFNSRIHPLLRMKLYRFVSWIGRWSMLDLFVIALMMSLINRDQLMTFTMGPAAFYFGTAVILTILAVEWFDSRLLWDTYATRRKQHTGNPSRNTSQT

Flanking regions ( +/- flanking 50bp)

TTTGGGCTTAAGCTAGGATAAGCGAGAAGAAAGACCAAATAGGCGGATAAATGAGCGATTTAGTCACCAAAGAAAGCAAATCAATACATTGTCAGGAGTGTGACCACCTCGTATCACTTCCTATAGACCTCAAGCGCGGCGAAGACGCCTATTGCCCACAATGTCAAGCCAAGTTAGCGACCTATCGTGATTGGTCATTAACTCGGCTATTAATTCTTTCTATCACCATGCTGATATTCGCGTCTATCGCTTTTACTCAACCTCTTATCAAGATCCATTTATTAGGGACCATGATATCAGCCAATGTTCTTGACGGTATTCGCTTAATGTCACAACAAGGCTCTCCATTAACGGCAACAATGGTTGCCTTTTGTGCCGTTGCCGCTCCTCTTAGTCTACCCATTGCCATTTTATATCTCCATTTAGGGGCTCGTTTACATCTAAATTTACGTCCCGTGCTATTAATGTTAGGTAAGCTAAAAGAATGGGTAATGCTGGATGTTTATTTAATTGGCCTTGGTGTTGCCACCATAAAACTAGGCGATTATGCCACAATCTATATTGGTCATGGCTTAGTTGCTTTTTCAGCTTTAATGGTTTTAAGTCTATTAATGCTTATTAACATTAATATGGATCAACTATGGCAACAGTTTTATCCACAAAAAGAGATAAAAACGAGTCCAGCAACCTGTCATGCATGTCATTACCATTTTAAAAAGCCACCTTCGAGCCATTGCCCAAGATGTAAATCTTGCTATAGTGCTCGTCAACCAATGAGTTTGCAAAAAACTTGGGCAGCACTCATCACAGCGATGCTCTTGCTATTACCGGCAAATTTATTACCTATCTCAATCTTTTATTTAAATGGCCAGCGTAATGAAGACACTATTTTTTCTGGCGTTCTCTCTTTAATTAATTCAGGTAATACACCTATTGCAATTATTGTGTTTATTGCCAGTATCTTTGTGCCTTTCTTTAAGATAATCATTATGCTGGGGTTACTATTGAGCATTCATTTTAACTCACGTATTCACCCTCTATTGCGCATGAAACTTTATCGATTTGTCTCTTGGATCGGCCGATGGTCAATGCTCGACCTGTTTGTGATTGCGCTGATGATGTCATTAATTAATCGAGATCAATTAATGACATTCACTATGGGACCTGCAGCTTTTTATTTTGGTACAGCTGTCATTCTCACTATCCTTGCCGTTGAATGGTTTGATAGTCGTTTATTATGGGATACTTATGCAACAAGAAGAAAACAACACACAGGCAACCCAAGCCGAAATACGTCGCAAACGTAAAATTTCGACTTTTTGGTTACTCCCTGTTATCGCTATTTTTATTGCGAGTT