Homologs in group_1939

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14555 FBDBKF_14555 62.0 Morganella morganii S1 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
EHELCC_15360 EHELCC_15360 62.0 Morganella morganii S2 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
NLDBIP_15890 NLDBIP_15890 62.0 Morganella morganii S4 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
LHKJJB_15950 LHKJJB_15950 62.0 Morganella morganii S3 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
HKOGLL_15070 HKOGLL_15070 62.0 Morganella morganii S5 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
F4V73_RS07350 F4V73_RS07350 61.5 Morganella psychrotolerans - NUDIX domain-containing protein

Distribution of the homologs in the orthogroup group_1939

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1939

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3Z2Y5 1.19e-72 217 65 0 148 3 nudJ Phosphatase NudJ Shigella sonnei (strain Ss046)
Q31ZL0 1.19e-72 217 65 0 148 3 nudJ Phosphatase NudJ Shigella boydii serotype 4 (strain Sb227)
P0AEI9 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Shigella flexneri
Q0T5N8 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Shigella flexneri serotype 5b (strain 8401)
Q32EZ2 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Shigella dysenteriae serotype 1 (strain Sd197)
Q1RD19 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli (strain UTI89 / UPEC)
B1LI09 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli (strain SMS-3-5 / SECEC)
P0AEI6 1.53e-72 217 65 0 148 1 nudJ Phosphatase NudJ Escherichia coli (strain K12)
B1IUD3 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AEI7 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TIT9 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AA28 1.53e-72 217 65 0 148 1 nudJ Phosphatase NudJ Escherichia coli O1:K1 / APEC
A7ZZ89 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli O9:H4 (strain HS)
B1XA44 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli (strain K12 / DH10B)
P0AEI8 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli O157:H7
A7ZKS4 1.53e-72 217 65 0 148 3 nudJ Phosphatase NudJ Escherichia coli O139:H28 (strain E24377A / ETEC)
P93740 1.43e-06 49 36 1 60 1 NUDT23 Nudix hydrolase 23, chloroplastic Arabidopsis thaliana
Q58549 2.84e-06 47 35 2 76 1 nudF ADP-ribose pyrophosphatase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q3U2V3 1.93e-05 46 27 2 97 1 Nudt18 8-oxo-dGDP phosphatase NUDT18 Mus musculus
P0C025 3.19e-05 45 28 5 123 1 NUDT17 Nucleoside diphosphate-linked moiety X motif 17 Homo sapiens
Q641Y7 4.27e-05 45 30 2 82 2 Nudt18 8-oxo-dGDP phosphatase NUDT18 Rattus norvegicus
P32091 0.000103 43 34 2 66 3 None MutT-like protein Streptomyces ambofaciens
Q6ZVK8 0.000116 44 29 2 82 1 NUDT18 8-oxo-dGDP phosphatase NUDT18 Homo sapiens
Q7ZWC3 0.000161 42 36 0 55 1 nudt1 Oxidized purine nucleoside triphosphate hydrolase Danio rerio
A4FUG7 0.000173 43 35 2 64 2 NUDT17 Nucleoside diphosphate-linked moiety X motif 17 Bos taurus
Q4V8V2 0.000257 43 28 5 125 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Danio rerio
Q9CWD3 0.000364 42 34 2 64 2 Nudt17 Nucleoside diphosphate-linked moiety X motif 17 Mus musculus
Q9SJC6 0.000378 42 28 4 112 2 NUDT5 Nudix hydrolase 5 Arabidopsis thaliana
Q94A82 0.000473 42 24 1 110 1 NUDT19 Nudix hydrolase 19, chloroplastic Arabidopsis thaliana
Q57B54 0.00059 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella abortus biovar 1 (strain 9-941)
Q2YLJ4 0.00059 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella abortus (strain 2308)
B2S7Z7 0.00059 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella abortus (strain S19)
A1WVE9 0.000598 41 42 1 57 3 rppH RNA pyrophosphohydrolase Halorhodospira halophila (strain DSM 244 / SL1)
M4I1C6 0.000633 41 37 0 54 1 NUDIX1 Geranyl diphosphate phosphohydrolase Rosa hybrid cultivar
Q5PQ04 0.000782 41 27 6 139 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Xenopus laevis
Q8YJ71 0.000876 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
C0RF85 0.000876 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella melitensis biotype 2 (strain ATCC 23457)
Q8FYM9 0.001 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella suis biovar 1 (strain 1330)
A9WWW1 0.001 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella suis (strain ATCC 23445 / NCTC 10510)
A5VSH6 0.001 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
A9M874 0.001 41 33 2 78 3 rppH RNA pyrophosphohydrolase Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04370
Feature type CDS
Gene -
Product NUDIX hydrolase
Location 981762 - 982214 (strand: -1)
Length 453 (nucleotides) / 150 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1939
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00293 NUDIX domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1051 Nucleotide transport and metabolism (F) F ADP-ribose pyrophosphatase YjhB, NUDIX family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12152 phosphatase NudJ [EC:3.6.1.-] Riboflavin metabolism -

Protein Sequence

MFKPHVTVACIVHANNKFLVVEETVNGKATWNQPAGHLEANETLIQAAQRELWEETGLTLPVQYFLKLHQWVAPDNTPFLRFLFLIEAPEQLATQPHDDDINGCYWVTAQEIINSQQLRSPLVKESILCYQQNERYPLSLLDSFGSTFAS

Flanking regions ( +/- flanking 50bp)

AAATATTACCTTGGATAATCTATTACCGGGTCAATGGAAGGAGATTAATTTTGTTTAAACCACATGTCACTGTTGCTTGTATTGTTCATGCAAACAATAAATTTTTAGTTGTTGAAGAAACGGTAAATGGCAAAGCCACATGGAATCAACCCGCAGGACATTTAGAAGCAAATGAAACCCTGATCCAAGCGGCACAACGAGAGTTATGGGAAGAAACCGGTTTAACCTTGCCGGTACAATATTTTTTGAAATTACATCAGTGGGTGGCACCGGACAATACGCCATTTTTGCGTTTTTTATTTTTGATAGAAGCACCAGAACAATTAGCCACACAACCACATGACGATGATATTAATGGCTGCTACTGGGTGACCGCGCAAGAGATAATCAATAGCCAACAATTACGTTCACCGCTGGTAAAAGAAAGTATTCTTTGTTATCAACAAAATGAACGTTATCCACTCTCTTTACTGGATAGCTTTGGTTCAACATTTGCCTCTTAACAATGACTTTCATAGTTAAGAAGGCAAAAAATGTATTCGTTTGATGCACC