Homologs in group_1976

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14555 FBDBKF_14555 81.3 Morganella morganii S1 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
EHELCC_15360 EHELCC_15360 81.3 Morganella morganii S2 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
NLDBIP_15890 NLDBIP_15890 81.3 Morganella morganii S4 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
LHKJJB_15950 LHKJJB_15950 81.3 Morganella morganii S3 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
HKOGLL_15070 HKOGLL_15070 81.3 Morganella morganii S5 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
PMI_RS04370 PMI_RS04370 61.5 Proteus mirabilis HI4320 - NUDIX hydrolase

Distribution of the homologs in the orthogroup group_1976

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1976

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3Z2Y5 1.99e-59 184 59 0 144 3 nudJ Phosphatase NudJ Shigella sonnei (strain Ss046)
Q31ZL0 1.99e-59 184 59 0 144 3 nudJ Phosphatase NudJ Shigella boydii serotype 4 (strain Sb227)
P0AEI9 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Shigella flexneri
Q0T5N8 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Shigella flexneri serotype 5b (strain 8401)
Q32EZ2 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Shigella dysenteriae serotype 1 (strain Sd197)
Q1RD19 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli (strain UTI89 / UPEC)
B1LI09 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli (strain SMS-3-5 / SECEC)
P0AEI6 2.1e-59 184 59 0 144 1 nudJ Phosphatase NudJ Escherichia coli (strain K12)
B1IUD3 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AEI7 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TIT9 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AA28 2.1e-59 184 59 0 144 1 nudJ Phosphatase NudJ Escherichia coli O1:K1 / APEC
A7ZZ89 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli O9:H4 (strain HS)
B1XA44 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli (strain K12 / DH10B)
P0AEI8 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli O157:H7
A7ZKS4 2.1e-59 184 59 0 144 3 nudJ Phosphatase NudJ Escherichia coli O139:H28 (strain E24377A / ETEC)
Q3U2V3 6.65e-08 53 34 2 81 1 Nudt18 8-oxo-dGDP phosphatase NUDT18 Mus musculus
Q641Y7 8.06e-08 53 34 2 81 2 Nudt18 8-oxo-dGDP phosphatase NUDT18 Rattus norvegicus
Q6ZVK8 9.05e-08 53 32 2 81 1 NUDT18 8-oxo-dGDP phosphatase NUDT18 Homo sapiens
Q9SJC6 9.84e-06 47 32 4 115 2 NUDT5 Nudix hydrolase 5 Arabidopsis thaliana
Q568Q0 9.89e-06 47 34 2 81 2 nudt18 8-oxo-dGDP phosphatase NUDT18 Danio rerio
P13420 2.02e-05 46 27 3 138 1 nudt6 Nucleoside diphosphate-linked moiety X motif 6 Xenopus laevis
O06972 2.22e-05 45 25 3 120 3 yvcI Uncharacterized Nudix hydrolase YvcI Bacillus subtilis (strain 168)
Q94B74 5.44e-05 45 26 3 119 1 NUDT2 Nudix hydrolase 2 Arabidopsis thaliana
Q9RVK2 5.62e-05 44 34 1 81 1 DR_1025 Nudix hydrolase DR_1025 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q4V8V2 7.06e-05 45 29 6 125 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Danio rerio
Q5PQ04 0.000138 43 26 3 123 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Xenopus laevis
Q5M8V2 0.000186 43 27 5 123 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Xenopus tropicalis
A4WWV6 0.000234 42 30 4 123 3 rppH RNA pyrophosphohydrolase Cereibacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
Q8CH40 0.000301 43 31 1 88 1 Nudt6 Nucleoside diphosphate-linked moiety X motif 6 Mus musculus
Q9SJC4 0.000469 42 32 5 121 1 NUDT6 Nudix hydrolase 6 Arabidopsis thaliana
A3PMX6 0.000736 41 27 3 120 3 rppH RNA pyrophosphohydrolase Cereibacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
Q9CA40 0.000765 40 36 1 66 1 NUDT1 Nudix hydrolase 1 Arabidopsis thaliana
P70563 0.000794 42 30 1 88 1 Nudt6 Nucleoside diphosphate-linked moiety X motif 6 Rattus norvegicus
B9KN59 0.000797 41 27 3 120 3 rppH RNA pyrophosphohydrolase Cereibacter sphaeroides (strain KD131 / KCTC 12085)
Q3IZC1 0.000797 41 27 3 120 3 rppH RNA pyrophosphohydrolase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
A8HRT0 0.000834 41 33 2 80 3 rppH RNA pyrophosphohydrolase Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07350
Feature type CDS
Gene -
Product NUDIX domain-containing protein
Location 1533933 - 1534394 (strand: 1)
Length 462 (nucleotides) / 153 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1976
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00293 NUDIX domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1051 Nucleotide transport and metabolism (F) F ADP-ribose pyrophosphatase YjhB, NUDIX family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12152 phosphatase NudJ [EC:3.6.1.-] Riboflavin metabolism -

Protein Sequence

MTFKPHITVACMVTAGDKFLVVEEAVKGKPTWNQPAGHLEAGESLIAAAERELYEETGISATPDALLKVHQWVAPDGTPFIRFLFRVPLETQCETCPQDRDIDCCHWVSADEIINSPILRSPLVKESMFAFFAAEPLPLSVLATFGDISESYP

Flanking regions ( +/- flanking 50bp)

TGGCGATTATACCCTTGATACACTCAAACCCGGCGACTGGAGAAGTGTGAATGACATTTAAGCCCCATATTACGGTTGCCTGCATGGTCACCGCAGGCGATAAATTTCTGGTGGTGGAAGAAGCAGTAAAGGGCAAACCGACCTGGAATCAGCCTGCCGGACATCTGGAAGCCGGTGAATCCCTGATTGCGGCGGCAGAGCGCGAACTGTATGAAGAGACCGGGATCAGCGCCACACCGGATGCCCTGCTGAAAGTTCATCAGTGGGTTGCACCGGACGGCACACCGTTTATCCGTTTTCTGTTCCGGGTCCCGCTGGAAACACAATGTGAAACCTGTCCGCAGGACAGGGATATTGATTGCTGTCACTGGGTCAGTGCTGATGAGATTATTAACAGCCCGATCCTGCGCTCGCCGCTGGTTAAAGAGAGTATGTTTGCCTTCTTTGCTGCCGAGCCGCTGCCGTTATCCGTGCTGGCCACGTTCGGTGATATCAGCGAAAGCTATCCGTAAAAATGCCCGGTGAAAAAAACACAGATTGTCCTGCCCTGATGATGCGCCGC