Homologs in group_1958

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14680 FBDBKF_14680 79.2 Morganella morganii S1 tatD metal-dependent hydrolase
EHELCC_15485 EHELCC_15485 79.2 Morganella morganii S2 tatD metal-dependent hydrolase
NLDBIP_16015 NLDBIP_16015 79.2 Morganella morganii S4 tatD metal-dependent hydrolase
LHKJJB_15825 LHKJJB_15825 79.2 Morganella morganii S3 tatD metal-dependent hydrolase
HKOGLL_14945 HKOGLL_14945 79.2 Morganella morganii S5 tatD metal-dependent hydrolase
F4V73_RS07475 F4V73_RS07475 79.5 Morganella psychrotolerans - metal-dependent hydrolase

Distribution of the homologs in the orthogroup group_1958

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1958

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ7 4.5e-144 407 76 0 256 1 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli (strain K12)
P0AFQ8 4.5e-144 407 76 0 256 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ9 4.5e-144 407 76 0 256 3 ycfH Uncharacterized metal-dependent hydrolase YcfH Escherichia coli O157:H7
P44718 3.53e-110 321 58 1 257 3 HI_0454 Uncharacterized metal-dependent hydrolase HI_0454 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57436 2.73e-97 288 50 2 264 3 BU355 Uncharacterized metal-dependent hydrolase BU355 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AG7 5.45e-96 285 50 1 258 3 bbp_325 Uncharacterized metal-dependent hydrolase bbp_325 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9J1 6.7e-96 285 48 2 262 3 BUsg_343 Uncharacterized metal-dependent hydrolase BUsg_343 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P37545 1.12e-66 210 39 2 256 3 yabD Uncharacterized metal-dependent hydrolase YabD Bacillus subtilis (strain 168)
P73335 5.04e-62 198 40 4 262 1 dtd3 D-aminoacyl-tRNA deacylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9PRC8 4.66e-46 157 35 8 256 3 UU017 Uncharacterized metal-dependent hydrolase UU017 Ureaplasma parvum serovar 3 (strain ATCC 700970)
O08343 1.29e-40 144 35 4 254 1 tatD Uncharacterized metal-dependent hydrolase TatD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A4WFX9 1.33e-34 128 33 3 241 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter sp. (strain 638)
B7LTZ5 4.62e-34 126 32 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q0SZ31 4.82e-34 126 32 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Shigella flexneri serotype 5b (strain 8401)
Q9L6M2 9.5e-34 125 30 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P27859 5.18e-33 124 32 4 252 1 tatD 3'-5' ssDNA/RNA exonuclease TatD Escherichia coli (strain K12)
P78005 2.31e-32 122 31 7 267 3 MPN_009 Uncharacterized metal-dependent hydrolase MPN_009 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
D8MKW4 2.98e-32 122 30 4 254 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia billingiae (strain Eb661)
B2VG45 3.87e-32 121 30 4 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
D4ICL5 4.21e-32 121 31 4 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)
A8ACY8 6.18e-32 121 31 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q3U1C6 2.27e-31 120 30 8 273 1 Tatdn3 Putative deoxyribonuclease TATDN3 Mus musculus
B5XYH5 6.5e-31 118 31 4 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Klebsiella pneumoniae (strain 342)
P47255 7.68e-31 118 33 9 263 3 MG009 Uncharacterized metal-dependent hydrolase MG009 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q58977 4.66e-30 115 30 8 255 3 MJ1582 Uncharacterized metal-dependent hydrolase MJ1582 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
D4GGR2 4.7e-30 116 30 5 242 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea ananatis (strain LMG 20103)
E1SKR8 1.05e-29 115 30 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea vagans (strain C9-1)
D2TUZ4 1.12e-29 115 30 5 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Citrobacter rodentium (strain ICC168)
A7MQN1 1.98e-29 114 30 4 240 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter sakazakii (strain ATCC BAA-894)
A1A4M4 4.11e-29 114 29 9 267 2 TATDN3 Putative deoxyribonuclease TATDN3 Bos taurus
Q17R31 1.65e-27 109 30 8 267 1 TATDN3 Putative deoxyribonuclease TATDN3 Homo sapiens
E3G381 1.85e-27 109 28 5 258 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Enterobacter lignolyticus (strain SCF1)
Q05AV0 2.59e-27 109 30 10 265 2 tatdn3-a Putative deoxyribonuclease tatdn3-A Xenopus laevis
E8XYF5 9.59e-27 107 28 4 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Rahnella sp. (strain Y9602)
Q503T5 1.01e-26 107 29 9 267 2 tatdn3 Putative deoxyribonuclease tatdn3 Danio rerio
C9XTA5 3.22e-26 106 30 4 239 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
D0Z9R0 4.32e-26 105 28 4 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Edwardsiella tarda (strain EIB202)
P44500 1.11e-25 104 26 5 263 3 HI_0081 Uncharacterized metal-dependent hydrolase HI_0081 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39408 6.67e-25 102 27 4 259 1 yjjV Uncharacterized metal-dependent hydrolase YjjV Escherichia coli (strain K12)
Q148G4 2.12e-24 102 27 6 270 2 TATDN1 Deoxyribonuclease TATDN1 Bos taurus
B7XJI2 6.49e-24 100 29 11 254 3 EBI_25826 Putative deoxyribonuclease TATDN1 homolog Enterocytozoon bieneusi (strain H348)
D0KC77 1.12e-23 99 28 5 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium parmentieri (strain WPP163)
A8G8C4 1.49e-23 99 28 6 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Serratia proteamaculans (strain 568)
E6WHK1 2.51e-23 98 27 5 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pantoea sp. (strain At-9b)
Q6P8M1 9.36e-23 97 27 6 270 1 Tatdn1 Deoxyribonuclease TATDN1 Mus musculus
Q6DAQ1 1.01e-22 97 28 5 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C6DI71 3.31e-22 95 28 5 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Pectobacterium carotovorum subsp. carotovorum (strain PC1)
C6C4V4 8.57e-21 91 26 4 253 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Musicola paradisiaca (strain Ech703)
B1JP69 1.5e-20 90 26 4 248 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q93075 1.5e-20 94 31 7 229 1 TATDN2 Putative deoxyribonuclease TATDN2 Homo sapiens
Q6GPM3 6.52e-20 89 27 9 265 2 tatdn3-b Putative deoxyribonuclease tatdn3-B Xenopus laevis
Q9UUF1 5.75e-19 87 26 9 275 3 pi038 Deoxyribonuclease Tat-D Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q6P1N9 1.39e-18 86 25 6 270 1 TATDN1 Deoxyribonuclease TATDN1 Homo sapiens
E0SLH6 3.21e-18 84 26 5 252 3 tatD 3'-5' ssDNA/RNA exonuclease TatD Dickeya dadantii (strain 3937)
Q8SW70 2.92e-16 79 32 5 156 3 ECU03_0200 Putative deoxyribonuclease TATDN1 homolog Encephalitozoon cuniculi (strain GB-M1)
C4VAS3 4.13e-16 79 25 10 260 3 NCER_101798 Putative deoxyribonuclease TATDN1 homolog Vairimorpha ceranae (strain BRL01)
Q640V9 1.4e-15 78 24 7 265 2 tatdn1 Deoxyribonuclease TATDN1 Xenopus laevis
Q6GML7 1.21e-14 75 26 8 277 1 tatdn1 Deoxyribonuclease TATDN1 Danio rerio
P45305 1.9e-11 65 25 12 267 3 HI_1664 Uncharacterized metal-dependent hydrolase HI_1664 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q58171 1.59e-08 57 26 9 209 3 MJ0761 Uncharacterized metal-dependent hydrolase MJ0761 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P38430 1.5e-07 55 28 6 178 1 YMR262W Uncharacterized deoxyribonuclease YMR262W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q58778 0.000875 43 25 12 225 3 MJ1383 Uncharacterized protein MJ1383 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04260
Feature type CDS
Gene -
Product metal-dependent hydrolase
Location 957327 - 958112 (strand: 1)
Length 786 (nucleotides) / 261 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1958
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01026 TatD related DNase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0084 Cell motility (N) N 3'->5' ssDNA/RNA exonuclease TatD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03424 TatD DNase family protein [EC:3.1.21.-] - -

Protein Sequence

MFLVDSHCHLDSLDYEKLHKNIDDVVEKAQQRDVKYMLAVATTLPGFKNMRELIGKRDNVAFSCGIHPLNLDEGHDVAELARLAAEADVVALGETGLDYYYQQENASLQREIFREHIRIGRQVNKPVIVHTRSAREDTLTILKEEKVQDCGGVLHCFTEDKETAMALLDLGMYISFSGIVTFRNAEQIREAARIVPLDRILVETDSPYLAPVPHRGKENQPAYVRDVAEYMAVLKGVSIEELAQQTTRNFATLFQIPNLAD

Flanking regions ( +/- flanking 50bp)

CAGACAAGTAAAAGAAATAATATAAAGTTATATAACGATGAGAGTACATTATGTTTTTAGTTGATTCACACTGCCATCTTGACAGCTTAGATTATGAAAAACTGCACAAAAATATTGATGATGTTGTAGAAAAAGCACAACAACGTGATGTCAAATATATGTTAGCTGTCGCAACAACATTACCCGGCTTTAAAAATATGCGCGAACTGATCGGCAAGCGTGATAATGTGGCTTTTTCTTGTGGTATTCACCCATTAAACCTTGATGAGGGACACGATGTCGCTGAGCTTGCGCGCCTTGCAGCTGAGGCCGATGTTGTTGCATTAGGCGAAACAGGTTTAGACTACTATTATCAACAAGAAAATGCGTCACTTCAGCGTGAAATTTTCCGTGAACATATTCGCATTGGGCGCCAAGTTAATAAACCTGTTATTGTACATACGCGTAGCGCTCGTGAAGATACGCTAACTATTTTAAAAGAAGAAAAGGTTCAAGACTGTGGCGGTGTATTGCACTGTTTTACGGAAGATAAAGAAACAGCAATGGCGCTACTTGATCTTGGTATGTACATCTCTTTTTCAGGCATTGTGACATTTAGAAATGCCGAGCAAATTAGAGAAGCTGCACGTATCGTACCACTTGATCGTATTCTGGTTGAAACGGACTCACCATATTTAGCGCCAGTGCCTCATCGTGGTAAAGAGAATCAACCCGCTTATGTACGTGATGTTGCTGAGTATATGGCCGTATTAAAAGGGGTGAGCATAGAAGAGCTTGCTCAGCAAACCACCCGTAATTTTGCAACACTTTTTCAAATACCAAACCTCGCAGACTAAGTTGTTCAATAGAAATATTGGCGAGTGATGGCTAGGAATTAAAATAAATA