Homologs in group_545

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01295 FBDBKF_01295 85.9 Morganella morganii S1 tssC type VI secretion system contractile sheath large subunit
EHELCC_00250 EHELCC_00250 85.9 Morganella morganii S2 tssC type VI secretion system contractile sheath large subunit
NLDBIP_03210 NLDBIP_03210 85.9 Morganella morganii S4 tssC type VI secretion system contractile sheath large subunit
LHKJJB_04725 LHKJJB_04725 85.9 Morganella morganii S3 tssC type VI secretion system contractile sheath large subunit
HKOGLL_02320 HKOGLL_02320 85.9 Morganella morganii S5 tssC type VI secretion system contractile sheath large subunit
F4V73_RS02375 F4V73_RS02375 84.9 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit

Distribution of the homologs in the orthogroup group_545

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_545

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I748 2.77e-110 338 41 7 431 1 tssC1 Type VI secretion system sheath protein TssC1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03680
Feature type CDS
Gene tssC
Product type VI secretion system contractile sheath large subunit
Location 827814 - 829292 (strand: -1)
Length 1479 (nucleotides) / 492 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_545
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05943 EvpB/VC_A0108, tail sheath N-terminal domain
PF18945 EvpB/VC_A0108, tail sheath gpW/gp25-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3517 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11900 type VI secretion system protein ImpC Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG038380 Type VI secretion system contractile sheath large subunit TssC/VipB VF0480 Effector delivery system

Protein Sequence

MSLNAEAQEQQAPASTGSLLDEIMAQSRMSPETEAYDIAKQGVAAFISNIFASESEDQQINRLLIDKMLVELDNKLSTQVDEILHAPKFQEIEASWRSLKLLVDRTDFRENIKINILHATKEELLEDFEFSPEIVQSGFYQHVYSSGYGQFGGEPVATVIGNYAFNNTAPDMKLMQYVSTVGAMAHAPFLSSVSPNFFGINSYAELPAIKDLKSVFEGPAHTKWRSLREAEDSRYLGLTAPRFLLRLPYSPTENPVKMFNYSENVKQDHEHYLWGNTAFLLASCINDSFAKYRWCPNIIGPQSGGTVNDLPVHIFEAMGELQTKIPTEVLVTDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTPEGKLAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNIWLKQYVADQENPPADVRSKRPLRSAEIKVLDVDGDPGWYQVAIQVRPHFKYMGANFELSLVGRLDKE

Flanking regions ( +/- flanking 50bp)

GAGCTCGATATTGCTGCTAATCAAAAATAATGTTTATAGAGGATTATTTCATGTCACTAAATGCAGAAGCTCAAGAGCAACAAGCCCCCGCATCTACAGGCTCTTTACTTGATGAAATTATGGCTCAATCACGTATGTCTCCAGAAACAGAAGCATACGATATTGCCAAACAAGGTGTTGCTGCTTTTATTAGTAATATTTTCGCCAGTGAATCTGAAGACCAACAGATCAATCGATTATTAATCGATAAAATGCTTGTTGAACTTGATAATAAACTAAGTACTCAAGTTGACGAAATTCTTCACGCGCCTAAATTTCAAGAAATTGAAGCTTCATGGCGTTCTTTAAAATTACTCGTTGATCGCACTGATTTTAGAGAAAATATTAAGATCAATATTCTTCATGCAACTAAAGAAGAGTTATTAGAAGATTTTGAATTTTCTCCAGAAATTGTTCAATCAGGCTTCTATCAACACGTCTACTCTTCAGGATACGGCCAATTTGGTGGTGAACCTGTTGCAACAGTTATTGGTAACTACGCCTTTAACAATACTGCGCCAGATATGAAGTTAATGCAGTATGTTAGTACTGTTGGTGCAATGGCTCACGCGCCATTCCTATCATCTGTTTCACCTAATTTCTTTGGTATTAATAGCTACGCTGAACTGCCGGCAATTAAAGATCTAAAATCTGTTTTTGAAGGCCCTGCACATACTAAATGGCGCTCACTGCGTGAAGCAGAAGATTCCCGTTATTTAGGGTTAACAGCACCGCGTTTCTTATTACGTTTGCCATACTCTCCAACAGAAAACCCTGTAAAAATGTTTAACTATTCAGAAAATGTTAAACAAGACCATGAGCACTATTTATGGGGTAATACCGCATTCTTATTAGCAAGCTGTATTAATGATAGTTTTGCAAAATATCGTTGGTGTCCAAACATTATTGGCCCACAAAGCGGCGGTACAGTTAATGATCTTCCTGTGCATATTTTTGAAGCGATGGGTGAATTACAAACTAAGATCCCAACTGAAGTTTTAGTTACCGATCGTAGAGAATTTGAACTAGCAGAAGAAGGCTTTATCACGCTGACCATGCGTAAAGGCAGTGATAATGCTGCATTCTTCTCCGCAAACTCGGTTCAAAAACCAAAAGTCTTCCCAAATACTCCTGAAGGCAAATTGGCAGAGACTAACTATAAGTTAGGAACTCAATTGCCATACATGTTTATTATCAATCGCTTAGCTCATTATATAAAAGTATTGCAACGTGAACAGATTGGCTCATGGAAAGAGCGTCAAGATCTGGAGCGTGAACTCAATATTTGGCTTAAGCAATATGTCGCAGATCAAGAAAACCCACCAGCAGATGTTCGTAGTAAACGTCCATTGCGTTCAGCTGAAATCAAAGTACTTGATGTTGATGGCGATCCAGGTTGGTACCAAGTCGCTATTCAAGTTCGCCCACATTTTAAATATATGGGTGCAAACTTTGAATTATCACTTGTTGGTCGTCTTGATAAAGAGTAACGGTGATGGCATCCAATTATGGCTGGCAGGCTAATGCTGGCGCCAGCTTA