Homologs in group_548

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01310 FBDBKF_01310 63.6 Morganella morganii S1 tssG type VI secretion system baseplate subunit TssG
EHELCC_00235 EHELCC_00235 63.6 Morganella morganii S2 tssG type VI secretion system baseplate subunit TssG
NLDBIP_03225 NLDBIP_03225 63.6 Morganella morganii S4 tssG type VI secretion system baseplate subunit TssG
LHKJJB_04740 LHKJJB_04740 63.6 Morganella morganii S3 tssG type VI secretion system baseplate subunit TssG
HKOGLL_02305 HKOGLL_02305 63.6 Morganella morganii S5 tssG type VI secretion system baseplate subunit TssG
F4V73_RS02360 F4V73_RS02360 63.9 Morganella psychrotolerans tssG type VI secretion system baseplate subunit TssG

Distribution of the homologs in the orthogroup group_548

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_548

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03665
Feature type CDS
Gene tssG
Product type VI secretion system baseplate subunit TssG
Location 824593 - 825630 (strand: -1)
Length 1038 (nucleotides) / 345 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_548
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06996 Type VI secretion, TssG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3520 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11895 type VI secretion system protein ImpH Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MASTNQPAHTEVIDRWLEQAGSSVTEYNFYQLVELLNKIIHQDVNSMEDDSGILRFKSYSNIAFPTRDVISIEKNNVEQYELEVAFLGLQGSQSPLPGYYLDEFAWEDAQQIEGISAFLDIFNHRLIALLYRIWRKYRYYICFENEGQDSFSQYMFSLVGLGNGANRGRIKINHSKMLAYAGLLASPSRSSDVISSLISHCFDLENVKVIGWETRRVPIPESQQNKLGTISHQSGQKSRPRMLLGENFSLGSHIYDCNGKCTIEISELSLERYMRFLPNGSDFAPLVAFVSYIFHEQLAWDLRLSIAEKQAEGFRLGHQQHNQLGWQSFLGQPAKKPDVTITVLE

Flanking regions ( +/- flanking 50bp)

ATGTTTCATGAGTTGGAAGTTATTAACCTTGATAATAAGGAAGTTTATCGATGGCCAGCACAAATCAACCAGCACATACTGAAGTAATCGATCGTTGGCTGGAACAAGCTGGCTCATCGGTAACAGAGTATAATTTTTATCAACTCGTTGAATTGTTAAATAAAATAATTCATCAAGATGTCAACTCGATGGAGGATGACAGCGGTATTCTTCGCTTTAAATCTTATTCAAATATTGCATTTCCGACGCGAGATGTCATTTCCATTGAAAAAAATAATGTCGAACAATATGAATTAGAAGTCGCTTTTTTAGGCTTACAAGGAAGTCAGTCCCCCCTACCAGGCTATTATCTGGATGAGTTTGCTTGGGAAGATGCACAACAGATAGAAGGTATCTCCGCTTTTCTCGATATCTTCAATCATCGTCTGATAGCGTTACTTTATCGGATCTGGCGCAAATATCGTTACTACATTTGCTTTGAAAATGAAGGTCAGGATTCATTTTCACAATATATGTTTTCTCTCGTTGGATTAGGTAATGGAGCTAATCGCGGTCGGATCAAAATCAACCATAGCAAAATGCTCGCTTATGCTGGTCTTTTGGCGAGTCCAAGTCGCTCTTCTGATGTGATTAGTAGTCTTATATCTCACTGTTTCGACTTAGAAAATGTAAAAGTAATTGGTTGGGAGACACGCCGTGTTCCTATTCCTGAATCACAACAAAACAAGTTAGGTACGATTTCTCATCAATCCGGACAAAAATCTCGCCCACGAATGTTATTAGGGGAAAATTTTAGTCTGGGCTCACACATATATGACTGCAATGGAAAATGCACCATCGAAATCAGTGAATTAAGTTTAGAACGCTATATGCGTTTTTTACCTAACGGCAGTGATTTCGCACCATTAGTTGCCTTTGTTTCTTACATTTTTCATGAGCAATTAGCTTGGGATTTACGTCTTAGCATTGCTGAAAAGCAAGCCGAAGGGTTCCGTTTGGGTCACCAACAACACAACCAATTAGGCTGGCAAAGCTTTTTAGGTCAACCCGCAAAGAAACCGGATGTCACCATTACGGTATTGGAATAAAGAGATGGATAAATATCAGCCAACAATTTCTTTTAGCATCAAAAATAGTG