Homologs in group_1225

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07140 FBDBKF_07140 77.4 Morganella morganii S1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
EHELCC_03830 EHELCC_03830 77.4 Morganella morganii S2 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
NLDBIP_03830 NLDBIP_03830 77.4 Morganella morganii S4 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
LHKJJB_09660 LHKJJB_09660 77.4 Morganella morganii S3 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
HKOGLL_09315 HKOGLL_09315 77.4 Morganella morganii S5 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
F4V73_RS01325 F4V73_RS01325 75.9 Morganella psychrotolerans ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO

Distribution of the homologs in the orthogroup group_1225

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1225

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75838 0 938 77 0 580 1 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO Escherichia coli (strain K12)
P44144 0 780 65 1 584 4 HI_1265 Uncharacterized protein HI_1265 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03480
Feature type CDS
Gene -
Product 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO
Location 773930 - 775687 (strand: -1)
Length 1758 (nucleotides) / 585 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1225
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding
PF18381 YcaO cyclodehydratase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1944 Translation, ribosomal structure and biogenesis (J) J Ribosomal protein S12 methylthiotransferase accessory factor YcaO

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09136 ribosomal protein S12 methylthiotransferase accessory factor - -

Protein Sequence

MSQTFIPGKDAALEDSIASFQQKLTQLGFNIEEASWLNPVPNVWSVHIRDKDCPLCFTNGKGATKKAALASALGEYFERLSTNYFFSDFWLGADIAEGEFVHYPNEKWFPLTDDDAVPEGLLDARLRQFYDPEGELCGSELVDLQSSNSERGICALPFIRQSDKTPVYIPVNIIANLYASNGMSAGNTQNEARVQGLSEVFERYVKNRIISERISLPKIPHEVLARYPAVIEAITTLEKEGFPIFSFDASLGGQFPVICVVLFNPQNGTCFASFGAHPDFGVALERTVTELLQGRSLKDLDVFNPPSFDDEEVGDHTNLETHFIDSSGLISWDLFKKDADYPFVDWDFSGSTEEEFHTLMSLCQQCGAEVYIMDYDHLGVYACRILVPGLSDIYPAEDLQLANNIMGVHWRDTILSLPTSHGTKEEYLSLIGQFDEDGLDDFTRIREMIGIAPGKDNGWSHLRVGELKSMLALAGGDLEQALVWVEWTQDFNASLFTPARQNYYRCLHNLLLLREEHERGPAQYMEAFSRMYGEETLQAALNAIEGKQPFYGLQPIDPSLANLPVHQSLLAAYEKLQQAKRQSNK

Flanking regions ( +/- flanking 50bp)

AGTATCATGTGCCCCTAACTATCACTCGTAAAATATTGATGAAACCTGCCATGTCACAAACATTTATTCCCGGCAAAGATGCCGCACTGGAAGACTCTATCGCTAGCTTTCAGCAAAAATTAACTCAGTTAGGTTTTAACATTGAAGAAGCTTCATGGTTAAATCCTGTTCCTAACGTTTGGTCTGTTCATATTCGTGATAAAGATTGTCCGTTATGTTTTACTAACGGCAAAGGTGCTACTAAAAAAGCAGCATTGGCTTCAGCATTAGGCGAATATTTTGAACGTCTCTCAACCAATTATTTCTTTTCTGATTTCTGGTTAGGTGCTGATATTGCAGAAGGTGAGTTTGTTCATTACCCAAATGAAAAATGGTTTCCACTGACAGATGATGATGCTGTACCTGAAGGCTTATTAGATGCACGTTTACGTCAATTTTACGATCCTGAAGGTGAGCTATGTGGCAGTGAACTGGTTGATTTACAATCAAGTAATTCAGAACGTGGTATTTGTGCCTTACCGTTTATTCGCCAATCAGATAAAACACCTGTATATATACCTGTTAATATCATTGCAAATCTTTATGCATCTAATGGTATGTCAGCAGGAAATACGCAAAATGAAGCTCGAGTGCAAGGGCTTTCTGAAGTGTTTGAACGCTATGTCAAAAATAGAATTATCAGCGAAAGAATTAGCTTGCCTAAAATCCCCCATGAAGTTTTAGCTCGTTATCCTGCTGTTATTGAAGCTATTACGACATTAGAAAAAGAAGGCTTCCCTATTTTTAGTTTTGATGCATCTTTAGGGGGACAATTCCCCGTTATTTGCGTCGTGCTGTTTAACCCACAAAATGGGACTTGTTTCGCTTCTTTTGGTGCTCATCCCGATTTTGGTGTGGCATTAGAGCGTACTGTTACTGAGTTATTGCAAGGCCGTAGCCTTAAAGATCTCGATGTTTTCAATCCACCGAGTTTTGATGATGAAGAAGTCGGTGACCACACTAATCTTGAAACCCACTTTATCGACTCTAGTGGTTTAATTAGTTGGGATCTGTTTAAAAAAGATGCAGACTATCCATTTGTTGATTGGGATTTCAGTGGTTCAACCGAAGAAGAATTTCACACATTAATGTCACTGTGCCAGCAATGTGGTGCGGAAGTGTATATTATGGATTATGACCATTTAGGGGTTTATGCTTGCCGTATTTTAGTCCCTGGCTTATCCGATATTTATCCTGCTGAAGATCTGCAACTAGCCAATAATATTATGGGTGTCCATTGGCGTGATACCATTCTTTCTTTACCAACAAGTCATGGCACAAAGGAAGAGTACCTCTCACTTATTGGCCAATTTGATGAAGATGGCTTAGATGACTTTACTCGTATCAGAGAAATGATTGGTATTGCACCGGGTAAAGATAATGGCTGGAGTCATTTACGTGTAGGTGAATTAAAATCAATGTTAGCACTCGCTGGCGGCGATTTAGAACAAGCATTAGTTTGGGTTGAGTGGACACAAGATTTCAACGCATCATTATTTACACCAGCGCGTCAAAATTATTATCGTTGCCTGCATAATCTTTTACTATTACGTGAAGAGCATGAGCGTGGGCCTGCACAATATATGGAGGCATTTTCTCGTATGTATGGCGAGGAAACACTGCAAGCTGCATTAAATGCAATTGAAGGTAAACAACCTTTTTATGGCTTGCAACCCATTGATCCATCATTAGCGAATTTGCCAGTTCATCAATCTTTATTAGCCGCGTATGAAAAATTACAACAAGCAAAACGTCAATCGAATAAATAACACTATTTTATTTAAGGTTATTTATTAAATAATTATTTTTAACTGAATAA