COG1944


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1944, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S12 methylthiotransferase accessory factor YcaO
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1944 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1225 FBDBKF_07140 98607 100421 -1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO Morganella morganii S1
1 group_1225 EHELCC_03830 85765 87579 1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO Morganella morganii S2
2 group_1225 NLDBIP_03830 85561 87375 1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO Morganella morganii S4
3 group_1225 LHKJJB_09660 85675 87489 1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO Morganella morganii S3
4 group_1225 HKOGLL_09315 103563 105377 -1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO Morganella morganii S5
5 group_1225 F4V73_RS01325 286341 288128 -1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO Morganella psychrotolerans
6 group_1225 PMI_RS03480 773930 775687 -1 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO Proteus mirabilis HI4320