Homologs in group_47

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06950 FBDBKF_06950 70.5 Morganella morganii S1 dacC D-alanyl-D-alanine carboxypeptidase
FBDBKF_10095 FBDBKF_10095 61.5 Morganella morganii S1 dacA D-alanyl-D-alanine carboxypeptidase DacA
EHELCC_04020 EHELCC_04020 70.5 Morganella morganii S2 dacC D-alanyl-D-alanine carboxypeptidase
EHELCC_04895 EHELCC_04895 61.5 Morganella morganii S2 dacA D-alanyl-D-alanine carboxypeptidase DacA
NLDBIP_04020 NLDBIP_04020 70.5 Morganella morganii S4 dacC D-alanyl-D-alanine carboxypeptidase
NLDBIP_04895 NLDBIP_04895 61.5 Morganella morganii S4 dacA D-alanyl-D-alanine carboxypeptidase DacA
LHKJJB_09850 LHKJJB_09850 70.5 Morganella morganii S3 dacC D-alanyl-D-alanine carboxypeptidase
LHKJJB_13735 LHKJJB_13735 61.5 Morganella morganii S3 dacA D-alanyl-D-alanine carboxypeptidase DacA
HKOGLL_09125 HKOGLL_09125 70.5 Morganella morganii S5 dacC D-alanyl-D-alanine carboxypeptidase
HKOGLL_12800 HKOGLL_12800 61.5 Morganella morganii S5 dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS00240 F4V73_RS00240 60.3 Morganella psychrotolerans dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS01135 F4V73_RS01135 69.5 Morganella psychrotolerans - serine hydrolase
PMI_RS02085 PMI_RS02085 59.3 Proteus mirabilis HI4320 dacA D-alanyl-D-alanine carboxypeptidase DacA

Distribution of the homologs in the orthogroup group_47

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_47

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08506 0.0 537 62 1 398 1 dacC D-alanyl-D-alanine carboxypeptidase DacC Escherichia coli (strain K12)
P0AEB2 1.99e-164 470 60 0 364 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli (strain K12)
P0AEB3 1.99e-164 470 60 0 364 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEB4 1.99e-164 470 60 0 364 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O157:H7
P37604 3.58e-131 385 49 1 367 3 dacD D-alanyl-D-alanine carboxypeptidase DacD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33013 8.26e-131 384 50 1 367 1 dacD D-alanyl-D-alanine carboxypeptidase DacD Escherichia coli (strain K12)
P44466 3.61e-128 377 51 2 364 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P38422 1.82e-61 206 35 6 366 2 dacF D-alanyl-D-alanine carboxypeptidase DacF Bacillus subtilis (strain 168)
P35150 3.62e-39 147 33 11 339 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Bacillus subtilis (strain 168)
P08750 7.61e-36 139 32 12 420 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Bacillus subtilis (strain 168)
Q05523 1.65e-35 139 29 14 426 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Geobacillus stearothermophilus
P39042 3.14e-20 93 29 10 276 1 None D-alanyl-D-alanine carboxypeptidase Streptomyces sp. (strain K15)
P72161 1.22e-18 89 29 6 268 3 pbpG D-alanyl-D-alanine endopeptidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O53380 1.54e-18 90 27 8 274 1 dacB1 D-alanyl-D-alanine carboxypeptidase DacB1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P0AFI6 7.3e-18 87 29 6 251 3 pbpG D-alanyl-D-alanine endopeptidase Shigella flexneri
P0AFI5 7.3e-18 87 29 6 251 1 pbpG D-alanyl-D-alanine endopeptidase Escherichia coli (strain K12)
I6Y204 9.99e-16 80 29 10 261 1 dacB2 D-alanyl-D-alanine carboxypeptidase DacB2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P44664 1.53e-06 53 25 9 239 3 pbpG D-alanyl-D-alanine endopeptidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03290
Feature type CDS
Gene -
Product serine hydrolase
Location 726267 - 727469 (strand: 1)
Length 1203 (nucleotides) / 400 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_47
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF00768 D-alanyl-D-alanine carboxypeptidase
PF07943 Penicillin-binding protein 5, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1686 Cell wall/membrane/envelope biogenesis (M) M D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07258 serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways		 -

Protein Sequence

MKTNLPSVLAKVTAGMGLLLIISSPTFAVNNPVPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVGQAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDASIALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRDVPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNMRLIAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGDKGEVALGVAKDASITIPKGELKNLKASFTLTNPELEAPLTQNQVVGTVNFLLNDEVIEQRPLVVKEAVEEGGFFSRIWDFVVKTVSGWFNALFG

Flanking regions ( +/- flanking 50bp)

GCCCTATAGTAGGAAAGCTTTAACAAATTGATATAAAAGGGTGATCGGTAATGAAAACAAATCTTCCATCCGTATTGGCTAAGGTTACCGCGGGAATGGGTTTACTGCTAATTATTTCTAGTCCTACTTTTGCGGTGAATAATCCTGTGCCGCCTCAAATTGAGGCTAAATCTTACGTATTAATGGATTATAACAGTGGAAAAATACTTGCTTCAGAGAAGCCTGAAGAGCGCCTAGATCCTGCCAGTCTAACCAAAATAATGAGTAGTTATGTGGTAGGACAAGCGATAAAAGAGGGACGTATGTCGCCCGATGATATTGTTATTGTTGGGCGCAATGCTTGGGCGACGGGTAATCCTGTTTTAAAGGGCTCATCCTTGATGTTTTTAAAACCAGGCGATCGAGTTAAAGTGATCGACTTAAATCGAGGTATGGTGATCCAATCTGGTAATGATGCCAGTATTGCGTTGGCAGAACATGTTGCCGGTAGCCAAGAAACCTTTGTTGATCTTATGAATACCTATGCCGCGAATTTAGGTTTAAAAAACACTCACTTTAAAACAGTACACGGTCTAGATTCTGAAGGGCAGTACACCACAGCACAAGATATGGCGTTATTAACAGCTGCCATGATCCGCGATGTACCTTCAGAATATGATATTCATAAAGAAAAAGAATTTACCTTCAACAATATTCGCCAGCCAAATCGTAACCGTCTATTGTGGAATAAAAATATGAATGTCGACGGTGTAAAAACCGGGCATACCAATGGGGCTGGCTATAACCTTGTCTCTTCGGCAACCGAAGGAAATATGCGTCTGATTGCAGTGGTTTTAGGGGCGCCATCAGATAAAGTGCGTTTTGCTGAAAGTGAAAGATTACTCGGCTGGGGTTTCCGCTTTTTTGAAACCGTGACACCTGTAAAAGAGAACGTGCCCCTGACTACGCAAAAAGTATGGTATGGCGATAAAGGTGAAGTGGCTTTAGGTGTTGCTAAAGATGCATCAATCACCATTCCTAAAGGAGAGCTAAAGAACTTAAAAGCCTCTTTTACATTGACTAACCCCGAATTAGAAGCACCATTAACACAAAATCAAGTAGTAGGAACAGTGAATTTCTTACTAAACGATGAAGTGATTGAGCAGCGCCCATTAGTGGTAAAAGAAGCGGTTGAAGAAGGTGGTTTCTTTAGTCGTATCTGGGACTTTGTGGTTAAAACAGTCTCTGGTTGGTTTAATGCGCTTTTTGGTTAATTAAGTTCATAATTACTGAAAAACTCACCCATTTAAAATAAGAATGCCAG