Homologs in group_470

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06950 FBDBKF_06950 100.0 Morganella morganii S1 dacC D-alanyl-D-alanine carboxypeptidase
EHELCC_04020 EHELCC_04020 100.0 Morganella morganii S2 dacC D-alanyl-D-alanine carboxypeptidase
LHKJJB_09850 LHKJJB_09850 100.0 Morganella morganii S3 dacC D-alanyl-D-alanine carboxypeptidase
HKOGLL_09125 HKOGLL_09125 100.0 Morganella morganii S5 dacC D-alanyl-D-alanine carboxypeptidase
F4V73_RS01135 F4V73_RS01135 92.0 Morganella psychrotolerans - serine hydrolase
PMI_RS03290 PMI_RS03290 70.5 Proteus mirabilis HI4320 - serine hydrolase

Distribution of the homologs in the orthogroup group_470

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_470

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08506 0.0 546 67 2 399 1 dacC D-alanyl-D-alanine carboxypeptidase DacC Escherichia coli (strain K12)
P0AEB2 6.75e-173 491 58 3 407 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli (strain K12)
P0AEB3 6.75e-173 491 58 3 407 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEB4 6.75e-173 491 58 3 407 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O157:H7
P44466 4.12e-128 377 51 2 362 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37604 1.45e-127 375 49 0 355 3 dacD D-alanyl-D-alanine carboxypeptidase DacD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33013 8.11e-125 369 49 2 370 1 dacD D-alanyl-D-alanine carboxypeptidase DacD Escherichia coli (strain K12)
P38422 2.03e-57 195 34 5 351 2 dacF D-alanyl-D-alanine carboxypeptidase DacF Bacillus subtilis (strain 168)
Q05523 2.37e-36 141 30 14 422 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Geobacillus stearothermophilus
P08750 5.73e-36 139 32 14 425 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Bacillus subtilis (strain 168)
P35150 5.49e-34 133 30 12 351 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Bacillus subtilis (strain 168)
P39042 5.89e-18 87 30 8 283 1 None D-alanyl-D-alanine carboxypeptidase Streptomyces sp. (strain K15)
P72161 6.27e-14 75 27 8 259 3 pbpG D-alanyl-D-alanine endopeptidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0AFI6 7.84e-14 75 27 8 256 3 pbpG D-alanyl-D-alanine endopeptidase Shigella flexneri
P0AFI5 7.84e-14 75 27 8 256 1 pbpG D-alanyl-D-alanine endopeptidase Escherichia coli (strain K12)
I6Y204 9.83e-12 68 25 8 261 1 dacB2 D-alanyl-D-alanine carboxypeptidase DacB2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O53380 4.36e-10 64 26 9 282 1 dacB1 D-alanyl-D-alanine carboxypeptidase DacB1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P44664 8.16e-06 50 25 7 219 3 pbpG D-alanyl-D-alanine endopeptidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_04020
Feature type CDS
Gene dacC
Product D-alanyl-D-alanine carboxypeptidase
Location 131029 - 132231 (strand: -1)
Length 1203 (nucleotides) / 400 (amino acids)
In genomic island -

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_470
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00768 D-alanyl-D-alanine carboxypeptidase
PF07943 Penicillin-binding protein 5, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1686 Cell wall/membrane/envelope biogenesis (M) M D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07258 serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways		 -

Protein Sequence

MQTVISSRVTGLIGGLAFGFLSIGHAFAEETPVAPQVDAKAYVLMDYNSGKILASANADERLDPASLTKIMSSYVVGQAIKAGKVTPDDIVTVGINAWATGNPVLKGSSLMFLKPDDRVKLIDLNKGMVIQSGNDASIALAEYVAGSQETFVSQMNSYAKQIGLTNTHFKTVHGLDSEGQYSTAKDMALLTQALITDVPDEYVIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGVKTGHTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFAESEKILSWGFRFFETVAPVKADTPLTTERVWFGDISEVPLGAEKDIYVTIPKGKLKDLKATFELDSTTLEAPLAKNQVVGKINFILDDKVVEQRPLVVQQQVEEAGFFGRIWDYIVRFFAGLWHSVFG

Flanking regions ( +/- flanking 50bp)

TATCACTCTTATTTTTGTCACGATGTACCGGGTTTAAAGAGGGAAGAGTAATGCAGACAGTAATCAGTTCACGGGTAACCGGTTTAATCGGCGGGCTTGCTTTCGGATTCTTAAGCATCGGCCACGCGTTTGCGGAGGAAACACCGGTTGCACCGCAGGTGGATGCAAAAGCGTATGTGCTGATGGACTACAACAGCGGGAAAATCCTGGCATCCGCGAATGCGGATGAGCGCCTTGACCCGGCGTCACTGACAAAAATCATGAGCAGTTATGTGGTCGGACAGGCGATTAAAGCCGGGAAAGTGACACCGGATGATATCGTCACCGTCGGTATTAATGCCTGGGCAACCGGTAACCCAGTGCTGAAAGGCTCTTCCCTGATGTTCCTCAAGCCCGATGACCGCGTAAAATTAATCGATCTGAACAAAGGGATGGTTATTCAGTCCGGCAATGACGCCAGTATTGCGCTGGCGGAATATGTCGCGGGCAGCCAGGAAACCTTTGTTTCGCAGATGAACAGTTATGCCAAACAGATTGGCCTGACAAATACCCATTTTAAAACGGTTCACGGGCTTGATTCCGAAGGGCAGTACAGTACTGCCAAAGATATGGCGCTGCTGACCCAGGCGCTGATCACCGATGTGCCGGATGAATATGTTATCCATAAAGAGAAAGAATTTACTTTTAATAAGATCCGTCAGCCGAACCGTAACCGCCTGCTGTGGAGCACTAATCTCAATGTGGATGGTGTGAAAACCGGTCACACCAGCGGTGCGGGACATAACCTGGTGGCTTCCGCGACCGACGGCCCGATGCGTCTGATTTCTGTGGTGCTGGGTGCACCGAGTGACCGTGTCCGCTTTGCTGAAAGCGAAAAAATCCTCTCCTGGGGCTTCCGTTTCTTTGAAACCGTGGCACCGGTGAAAGCCGATACCCCGCTGACCACTGAGCGCGTCTGGTTCGGGGATATTTCAGAAGTGCCGCTGGGCGCGGAAAAAGACATTTATGTCACTATCCCGAAAGGCAAACTCAAAGATCTGAAAGCGACCTTTGAGCTGGACAGCACCACGCTGGAAGCGCCGCTGGCGAAAAACCAGGTGGTCGGGAAAATCAACTTTATCCTTGATGATAAAGTCGTTGAACAGCGTCCGCTGGTAGTTCAGCAGCAGGTTGAGGAAGCCGGTTTCTTCGGCCGTATCTGGGATTATATTGTCCGCTTCTTTGCCGGACTGTGGCATTCCGTCTTCGGTTAAGCGGGCTGTATTTATAAGGTTATTCCCCTTTCAGGCGGCAATTTATCATG